fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G04390 C2H2-type zinc finger family protein (.1)

>AT5G04390.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
NheI G|CTAGC 517
StyI C|C[AT][AT]GG 161, 324
XbaI T|CTAGA 408


Click here to view TAIR data

>AT5G04390.1 length:1089
ATGGAAGCGT TCGAAGAGGC CACAAAGGAG CAATCTTTGA TCCTTAAAGG 
50
GAAGCGGACG AAGCGACAAC GTCCACAATC TCCTATTCCT TTCTCTATCT 
100
CCCCTCCTAT AGTTTCTACC CCGGAAAACA ACATGGAAGA AGAATACACT 
150
GATCTTGATT CCAAGGACAA TGCTTTAGGA AATGATGAGG GCAACCACAA 
200
AAAGGATGGT GTGATCACAT CTTCATCTTC ATCAGCCTCT TGGTCCTCCC 
250
AAAACAATCA CACATTGAAG GCAGCAGAAG ACGAGGAAGA TCAAGACATA 
300
GCCAATTGTT TGATACTCCT TGCCCAAGGA CACTCTCTTC CCCACAACAA 
350
TCACCACTTA CCAAACAGCA ACAACAACAA CACGTATAGA TTTACCAGCA 
400
GGAGGTTTCT AGAAACTTCT TCTTCTAACA GTGGTGGAAA AGCCGGTTAC 
450
TACGTTTATC AGTGCAAGAC ATGTGACCGG ACCTTCCCTT CTTTTCAGGC 
500
TTTAGGTGGC CACAGAGCTA GCCACAAGAA ACCTAAAGCC GCCTCTTTTT 
550
ACTCCAACCT TGACCTCAAG AAGAACACGT ATGCAAACGA CGCCGTTTCA 
600
CTTGTACACA CAACCACAAC TGTTTTCAAG AACAATAACA GTAGATCACT 
650
TGTCGTGTAC GGTAAGGCAA GTAAAAATAA GGTTCATGAA TGTGGAATCT 
700
GTGGAGCCGA GTTTACGTCC GGACAAGCCT TAGGTGGCCA CATGAGACGG 
750
CATAGAGGAG CTGTGGTTGT TCCGGCGGTG ATAGCCCCCA CCGTGACGGT 
800
GGCCACGGCT GCGGCCAACA CGGAGCTATC ACTGTCTTCG ATGTCGTTCG 
850
ATCAAATATC GGACGGTCAT CAGGATCATC TGGCGATGCC AGCGAAAAAG 
900
AAAGCTAGGA CGGTCGTGTC ACTGGATTTG GATCTGAATC TACCAGCACC 
950
GGAAGATGAG AATCGGGTCA ACGGATTCAG CTTTGCTTCA AAGCAAAATC 
1000
ACGAACAAGA ACATCAACAG AAGAAGCAAA GAGAAGAACC AAAGTCTCTT 
1050
GTCTTGTCTG CTCCTACTTT GGTGGATTGC CACTACTGA
1100

>AT5G04390.1 longest ORF length:362
MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT 
50
DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI 
100
ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY 
150
YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS 
200
LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR 
250
HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK 
300
KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL 
350
VLSAPTLVDC HY
400