fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G04400 ANAC077 NAC domain containing protein 77 (.1)

>AT5G04400.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 918
EcoRV GAT|ATC 778
HindIII A|AGCTT 1128
StyI C|C[AT][AT]GG 305, 396
XhoI C|TCGAG 202


Click here to view TAIR data

>AT5G04400.1 length:1188
ATGGCTCGCG ACTCCAAGAA AGCTGGTGGA GCTTTACCGG CGCCGGCGAC 
50
TGCTATGGGT AATGCTGCGG CGGAGACATC GCTCCCTCCT GGCTTCCGAT 
100
TTCATCCATC CGATGAAGAA CTCATTAGCT ATTACTTGAA GAAGAAGGTT 
150
CAGGGAAAAC CCATGCGATA CGATGAGATT GGAGAAGTAG ATATTTGCAA 
200
GCTCGAGCCC TGGGACTTAG CAGTTATAAT CTTCCTCTGT TTCTTGGCTT 
250
TAGATTTCCG TTATGTGTTA AAGACAAGGG ACAAAGAATG GTTCTTCTTC 
300
AGTGCCTTGG ATAAGAAGAC TCGCACTGGT ACTTCTATGA GCCGAGCAAC 
350
AAAGCAAGGC TACTGGAAAG TCACTGGAAC AGACGGGAAA ATCCGCCAAG 
400
GAGGAGACGG TAAGGTGACC ATTGGTACGA TGAAGACTCT TGTGTTTCAC 
450
AGGGGGCGTA GTCCAAACGG TCTGGGAACC GATTGGGTGA TGAATGAGTA 
500
TCACCTCGCT AAAAATGACG AAGGCGTTCC GCAAAACAAT ACAGGGAGCA 
550
GATATGCACC ATTCTTGGAA GAAGAGTGGG ATGATGATAA TGGTGAAAGA 
600
GTTGCGATCC ATGTTCCAGA TGACGGTCCA TTGCCTCTTT GTGTCCTCAA 
650
CAAAGAAGCT CCATTGCCTC TCATCCAATA CAAACGCAAG CGCCGAATCA 
700
GCTCAAGTCA AACCACTCAA GACCACCGTT CCTTCACAGA AACAATCATT 
750
GACAGTACTG CTTCCGCTGA GCCGCTCGAT ATCTCAGAAC GAATTGCATT 
800
AAGAGCGCTC AACGGTATGT TAGATGATCT GGAGAAGGAG CAAGAACCAG 
850
TTGTTGTGGA TGGCAATAAA ATCAACGAGA TTCAACAGGA AAGTCAGTTG 
900
CAGAGAAAGA AACTCATAGA TCTGAACCTC AAAGAAGACG CTCCATCGCC 
950
TCTTTGTGTC GTCAACAAAG AAACTCCATC ACCTCTCAAA TATATGATCG 
1000
ATGATCTGGA GAAGGAACAA GAACCAGCCA CCAAGAGGAT CAACGATCTG 
1050
GTACTGAAGG AGAATGACGA GATAGTTGTG TTCAGAGAGA TGCAAGAGCG 
1100
TGAAAGTATG AAGGCAGAAA TGGAGATAAG CTTTCTTGAA GCGCAAATTG 
1150
ATGCGTTGGA TAGAAAAATT GATCATCCTC ATAAATAA
1200

>AT5G04400.1 longest ORF length:395
MARDSKKAGG ALPAPATAMG NAAAETSLPP GFRFHPSDEE LISYYLKKKV 
50
QGKPMRYDEI GEVDICKLEP WDLAVIIFLC FLALDFRYVL KTRDKEWFFF 
100
SALDKKTRTG TSMSRATKQG YWKVTGTDGK IRQGGDGKVT IGTMKTLVFH 
150
RGRSPNGLGT DWVMNEYHLA KNDEGVPQNN TGSRYAPFLE EEWDDDNGER 
200
VAIHVPDDGP LPLCVLNKEA PLPLIQYKRK RRISSSQTTQ DHRSFTETII 
250
DSTASAEPLD ISERIALRAL NGMLDDLEKE QEPVVVDGNK INEIQQESQL 
300
QRKKLIDLNL KEDAPSPLCV VNKETPSPLK YMIDDLEKEQ EPATKRINDL 
350
VLKENDEIVV FREMQERESM KAEMEISFLE AQIDALDRKI DHPHK
400