fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G05090 Homeodomain-like superfamily protein (.1)

>AT5G05090.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
NheI G|CTAGC 376
SacI GAGCT|C 513
XhoI C|TCGAG 788


Click here to view TAIR data

>AT5G05090.1 length:801
ATGAGAGAAG AAGATTCCAA TTGGTTTGCT AAATGGGAAG AAGAGCTTCC 
50
GTCGCCGGAG GAACTCATAC CTTTATCTCA ATCTTTAATC ACGCCTGATC 
100
TCGCCATCGC CTTCGATCTC CACCGTAACA ACAACTCAAA CTCCGGTCAA 
150
CCTCTACCTC AAACCACACC GCCACAACCC AATTCCTCAG CCGAAATCGC 
200
CGGAGACTCT ACCGGAGACG AACCAGCAAG AACGCTAAAA CGACCGCGTT 
250
TAGTATGGAC GCCACAGCTA CACAAACGTT TCGTAGACGC GGTGGCTCAT 
300
CTCGGGATAA AAAACGCGGT TCCTAAAACC ATCATGCAGC TTATGAGCGT 
350
TGATGGTTTA ACAAGAGAAA ACGTCGCTAG CCATTTGCAA AAATACAGAC 
400
TTTACCTCAA AAGAATGAAA TCCGGCGGCG GAGGAGGCGG CAGCGGTGAT 
450
TCCGATCATC TCTTTGCCAG CTCACCTGTT CCTCCACATT TCCTCCATCC 
500
GACAAGTAGA CAGAGCTCCG ACCTTTTCAT ACCCTCTTTT GTCCCAATTT 
550
CAACTCAGCA GCAACATATC GCAGCACCAC CGTCTCAGTT CCTCCACCGA 
600
CAAATCTCCG CCGTTAATTT CACTTCACCG ACCAAAGCGA CCGACCAAGC 
650
AATGTTCTTG GCTAGGCAGC AGAGTGAACT ACAGCAACCA GTTTTCAAAC 
700
CATCTTCATT GCATTTACAT AGTCAAGTCG CTAATTACAC GCAAGATTTG 
750
AAATCAGGAG CCAAAACGGT CTTGACTCTG TTTCCAACTC GAGACGATTG 
800
A
850

>AT5G05090.1 longest ORF length:266
MREEDSNWFA KWEEELPSPE ELIPLSQSLI TPDLAIAFDL HRNNNSNSGQ 
50
PLPQTTPPQP NSSAEIAGDS TGDEPARTLK RPRLVWTPQL HKRFVDAVAH 
100
LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMK SGGGGGGSGD 
150
SDHLFASSPV PPHFLHPTSR QSSDLFIPSF VPISTQQQHI AAPPSQFLHR 
200
QISAVNFTSP TKATDQAMFL ARQQSELQQP VFKPSSLHLH SQVANYTQDL 
250
KSGAKTVLTL FPTRDD
300