fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G05120 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G05120.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 346, 422
BglII A|GATCT 213
NcoI C|CATGG 323
StyI C|C[AT][AT]GG 97, 323, 486


Click here to view TAIR data

>AT5G05120.1 length:606
ATGTTGTCCT CGGACTCGAA TTACGCTAGT GATATTAGCG ACGATGCCTC 
50
CGCCACCGGA TCGATAGAGA ATCCTATATA CAAATGCAAG TATTGTCCTA 
100
GGAAGTTCGA TAAAACACAA GCATTAGGTG GTCATCAAAA TGCACACAGA 
150
AAGGAGAGAG AGGTCGAAAA ACAACAAAAA GCATTTTTGG CGCATTTGAA 
200
CCGACCAGAA CCAGATCTTT ACGCGTACTC GTATTCGTAT CATCATTCAT 
250
TTCCTAACCA ATACGCACTC CCACCGGGAT TTGAACAGCC TCAGTACAAA 
300
GTTGATAGAT CATACAAGAT GTCCATGGTC TACAACCAAT ATGTGGGATC 
350
CTCAAGCTCT AGCTTTGCAG GACTACAAAG TGACCCAAGT CAAGGAATGA 
400
ACCAGGATTG GACCTTTACC GGGATCCCAT TCCTACCCCA ATCTCAACCT 
450
CAACCACTAT CGTCACCAAT ATGTTTGGAT CTTTGCCTTG GCATTGGTAG 
500
CTCCCAAACC CAACCACAAC CTCAAGAACC AAATGATGCA ACAGAAGAGA 
550
TGGATGCTGA GAAAGAAAAT GATGGTTCTT CCCTTTCTCT CTCACTCAAA 
600
CTGTGA
650

>AT5G05120.1 longest ORF length:201
MLSSDSNYAS DISDDASATG SIENPIYKCK YCPRKFDKTQ ALGGHQNAHR 
50
KEREVEKQQK AFLAHLNRPE PDLYAYSYSY HHSFPNQYAL PPGFEQPQYK 
100
VDRSYKMSMV YNQYVGSSSS SFAGLQSDPS QGMNQDWTFT GIPFLPQSQP 
150
QPLSSPICLD LCLGIGSSQT QPQPQEPNDA TEEMDAEKEN DGSSLSLSLK 
200
L
250