fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G05770 WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1)

>AT5G05770.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AflIII A|CPuPyGT 218
AluI AG|CT 25, 111, 183, 244
AvaII G|G[AT]CC 158
BclI T|GATCA 291
BfaI C|TAG 27, 246
BglII A|GATCT 123, 173, 309
BsaBI GATNN|NNATC 308
BsiHKAI G[AT]GC[AT]|C 153
BsiWI C|GTACG 336
BslI CCNNNNN|NNGG 360
Bsp1286I G[GAT]GC[CAT]|C 153
BstYI Pu|GATCPy 123, 173, 309
DdeI C|TNAG 186, 316
DpnI GA-CH3|TC 122, 172, 290, 308
DpnII |GATC 122, 172, 290, 308
HindIII A|AGCTT 112
HinfI G|ANTC 13, 89, 164
HpaII C|CGG 265
Hpy188I TCN|GA 116, 167
Hpy99I CG[AT]CG| 4, 339
HpyCH4III ACN|GT 83, 96, 196, 279
HpyCH4IV A|CGT 216, 333, 337
MboI |GATC 122, 172, 290, 308
MseI T|TAA 21, 364
MspI C|CGG 265
MwoI GCNNNNN|NNGC 110
NlaIV GGN|NCC 230
RsaI GT|AC 335
Sau3AI |GATC 122, 172, 290, 308
Sau96I G|GNCC 158
Taqƒ¿I T|CGA 5
TfiI G|A[AT]TC 13, 89, 164
XmnI GAANN|NNTTC 220


Click here to view TAIR data

>AT5G05770.1 length:369
ATGTCGTCGA GAGGATTCAA CATTAAAGCT AGAGGATTAT GTAATAACAA 
50
CAACGGAGGA GGAGGAACGG GGGCGAAGTG TGGACGGTGG AATCCAACGG 
100
TGGAGCAAGT GAAGCTTCTG ACAGATCTGT TCAAGGCGGG ACTGCGAACA 
150
CCGAGCACGG ACCAGATTCA GAAGATCTCT ATGGAGCTGA GTTTCTACGG 
200
TAAGATTGAG AGCAAGAACG TGTTCTATTG GTTCCAAAAC CATAAAGCTA 
250
GAGAGAGACA AAAGTGCCGG AAAATCTCCA CCGTCAAGTT TGATCATCGT 
300
CAAGATACAG ATCTTTCTAA GCCTCGCCGA GACAACGTAC GTCGTCATCA 
350
ACTACCAGCG AAAGGTTAA
400

>AT5G05770.1 longest ORF length:122
MSSRGFNIKA RGLCNNNNGG GGTGAKCGRW NPTVEQVKLL TDLFKAGLRT 
50
PSTDQIQKIS MELSFYGKIE SKNVFYWFQN HKARERQKCR KISTVKFDHR 
100
QDTDLSKPRR DNVRRHQLPA KG
150