fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G06070 RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G06070.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaLI, AscI, AvaII, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BssHII, BstEII, BstXI, BstZ17I, BtrI, BtsI, Cfr10I, ClaI, DraIII, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PleI, PmeI, PmlI, PpuMI, PstI, PvuI, RsrII, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, StuI, TliI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 2272, 3703, 3979, 4562
AccII(FnuDII) CG|CG 1815, 2406, 2511
AciI C|CGC 1814, 4742
AclI AA|CGTT 4303, 4492, 5902, 6032
AflII C|TTAAG 3719, 4762
AflIII A|CPuPyGT 171, 1443, 2849, 3663, 3799, 4906, 5764
AluI AG|CT 133, 327, 791, 1399, 1435, 1842, 3500, 3657, 3760, 4113, 4192, 4250, 4321, 4722, 4735, 4758, 5399
AlwNI CAGNNN|CTG 6162
ApaI GGGCC|C 3538
ApoI Pu|AATTPy 527, 1307, 1410, 1463, 2184, 2400, 2648, 2905, 3403, 4682, 5541, 5931, 6025, 6234, 6289, 6460
AseI AT|TAAT 702, 2656, 2694, 2830, 3517, 3694, 3736, 3780, 5647
AvaI C|PyCGPuG 2167
BalI TGG|CCA 2255, 4228
BanII GPuGCPy|C 2985, 3538, 4322
BclI T|GATCA 1579, 2104
BfaI C|TAG 131, 325, 685, 1265, 1433, 1437, 4286, 4730, 4756, 5526, 5800
BglII A|GATCT 814
BsaAI PyAC|GTPu 1444, 3662, 3982, 4907
BsaBI GATNN|NNATC 510, 1630
BsaHI GPu|CGPyC 3104
BsaJI C|CNNGG 71, 3481, 4234, 4585
BsaWI [AT]|CCGG[AT] 2229
BsiEI CGPuPy|CG 4556
BsiHKAI G[AT]GC[AT]|C 351, 4322, 6314
BslI CCNNNNN|NNGG 263, 1999, 2372, 3327, 4706, 5313, 5344
BsmI GAATGCN| 297, 4097
BsoBI C|PyCGPuG 2167
Bsp1286I G[GAT]GC[CAT]|C 351, 2985, 3538, 4322, 6314
BspHI T|CATGA 1567, 4704
BsrDI GCAATGNN| 98
BsrGI T|GTACA 1107
BsrI ACTGGN| 232, 1449
BssKI |CCNGG 3407
BssSI C|TCGTG 2347, 3708
BstAPI GCANNNN|NTGC 4255
BstBI TT|CGAA 5017, 5537, 6085
BstF5I GGATGNN| 600, 4147, 4642
BstNI CC|[AT]GG 3407
BstUI CG|CG 1815, 2406, 2511
BstYI Pu|GATCPy 814, 2425, 2913, 4716
Bsu36I CC|TNAGG 4748
BtgI C|CPuPyGG 3481
Cac8I GCN|NGC 679, 693, 1346, 1787, 1983, 3018, 4281
DdeI C|TNAG 117, 1139, 1276, 1798, 2333, 2387, 2920, 2979, 4116, 4195, 4566, 4573, 4725, 4747, 5811, 5832, 6156
DpnI GA-CH3|TC 557, 813, 909, 1578, 1771, 1989, 2103, 2208, 2424, 2785, 2895, 2912, 4385, 4413, 4580, 4608, 4690, 4715, 4739, 5651
DpnII |GATC 557, 813, 909, 1578, 1771, 1989, 2103, 2208, 2424, 2785, 2895, 2912, 4385, 4413, 4580, 4608, 4690, 4715, 4739, 5651
DraI TTT|AAA 766, 1310
DrdI GACNNNN|NNGTC 575, 1271, 3367, 4555, 4644
EaeI Py|GGCCPu 2255, 4162, 4228, 4698
EcoO109I PuG|GNCCPy 3539
EcoRI G|AATTC 2905
Fnu4HI GC|NGC 1182, 1870, 1948, 2003, 4207, 4249
FspI TGC|GCA 434
HaeIII GG|CC 468, 1372, 2254, 2992, 3537, 4134, 4161, 4227, 4697
HhaI GCG|C 433, 1891, 4277
HinP1I G|CGC 433, 1891, 4277
HincII GTPy|PuAC 2272, 4391, 4753, 4902
HindIII A|AGCTT 4114
HinfI G|ANTC 602, 727, 2240, 2351, 3002, 3351, 3367, 3571, 3600, 3682, 3705, 4327, 6160
HpaI GTT|AAC 4753
HpaII C|CGG 2228
Hpy188I TCN|GA 633, 714, 888, 912, 2101, 2243, 2334, 2472, 2999, 3058, 3565, 3574, 3685, 4143, 4586, 4686, 6157, 6298
Hpy99I CG[AT]CG| 635, 1467, 2270, 2297, 2404
HpyCH4III ACN|GT 361, 492, 1146, 1240, 2734, 3308, 4817, 5190, 5461, 5560, 5584, 5792
HpyCH4IV A|CGT 32, 171, 1443, 1468, 1696, 2107, 3380, 3661, 3884, 3981, 4302, 4491, 4906, 5378, 5901, 6031
HpyCH4V TG|CA 93, 123, 342, 1172, 1183, 1380, 1788, 1809, 2145, 2527, 3015, 3143, 4059, 4220, 4247, 5230, 5682, 5719, 6169, 6175
MboI |GATC 557, 813, 909, 1578, 1771, 1989, 2103, 2208, 2424, 2785, 2895, 2912, 4385, 4413, 4580, 4608, 4690, 4715, 4739, 5651
MfeI C|AATTG 3530
MscI TGG|CCA 2255, 4228
MseI T|TAA 184, 227, 237, 301, 417, 506, 669, 701, 765, 1236, 1309, 1321, 1329, 1533, 2042, 2217, 2543, 2554, 2566, 2644, 2655, 2693, 2706, 2765, 2774, 2781, 2829, 3241, 3313, 3377, 3516, 3630, 3693, 3718, 3735, 3740, 3779, 3794, 3909, 4045, 4752, 4761, 4769, 4786, 4812, 4938, 5093, 5098, 5236, 5413, 5646, 5658, 5858, 5946, 5984, 6004, 6074, 6143, 6186, 6395, 6511
MslI CAPyNN|NNPuTG 688, 1366, 4529
MspA1I C[AC]G|C[GT]G 1872, 4193
MspI C|CGG 2228
MwoI GCNNNNN|NNGC 1323, 1923, 4255
N.BstNBI GAGTCNNNN|N 3372
NdeI CA|TATG 384, 2525, 3363, 4078, 4297, 5680
NlaIII CATG| 1170, 1360, 1566, 1767, 1786, 1982, 2371, 2448, 2848, 3178, 3798, 3873, 4222, 4245, 4523, 4620, 4703, 5172, 5452, 5763, 6054, 6242
NlaIV GGN|NCC 2363, 2984, 3485, 3538, 4456
NspI PuCATG|Py 1787, 1983, 2849, 3799, 4223, 5764
PciI A|CATGT 2849, 3799, 5764
PflFI GACN|NNGTC 1823
PflMI CCANNNN|NTGG 2372
PshAI GACNN|NNGTC 625
PsiI TTA|TAA 178, 476, 1612, 1686, 2688, 3616, 5546, 6419, 6477
PspGI |CC[AT]GG 3407
PspOMI G|GGCCC 3538
PvuII CAG|CTG 4193
RsaI GT|AC 30, 1106, 1148, 1445, 1470, 1504, 1553, 2633, 3274, 3305, 3544, 4569, 5803
SacI GAGCT|C 4322
SalI G|TCGAC 2272
Sau3AI |GATC 557, 813, 909, 1578, 1771, 1989, 2103, 2208, 2424, 2785, 2895, 2912, 4385, 4413, 4580, 4608, 4690, 4715, 4739, 5651
Sau96I G|GNCC 468, 2993, 3537
ScaI AGT|ACT 4570
ScrFI CC|NGG 3407
SfcI C|TPuPyAG 1539, 4855, 5340, 6507
SmlI C|TPyPuAG 3719, 4720, 4762, 4830
SpeI A|CTAGT 1266, 5527, 5801
SphI GCATG|C 1787, 1983
SspI AAT|ATT 770, 1574, 2664, 2872, 4944, 5003, 5140
StyI C|C[AT][AT]GG 71
SwaI ATTT|AAAT 767
Taqƒ¿I T|CGA 148, 707, 1088, 1465, 2271, 2402, 3679, 4106, 4309, 4324, 5016, 5536, 5653, 6021, 6084, 6092, 6191
TfiI G|A[AT]TC 602, 727, 2240, 2351, 3002, 3351, 3571
TseI G|C[AT]GC 1182, 1870, 1948, 2003, 4249
Tsp45I |GT[CG]AC 1164, 2139, 2171, 3246, 4128, 5321, 5789
Tsp509I |AATT 182, 239, 419, 472, 526, 550, 642, 703, 762, 924, 1014, 1201, 1306, 1409, 1462, 1530, 1548, 1638, 2183, 2264, 2399, 2530, 2564, 2623, 2647, 2653, 2691, 2704, 2709, 2767, 2776, 2793, 2827, 2877, 2886, 2904, 3084, 3137, 3160, 3239, 3375, 3402, 3440, 3463, 3496, 3514, 3529, 3609, 3628, 3695, 3737, 3774, 4681, 4767, 4924, 4936, 5047, 5096, 5110, 5156, 5200, 5211, 5233, 5261, 5311, 5411, 5512, 5540, 5656, 5870, 5930, 6024, 6141, 6233, 6288, 6304, 6341, 6459, 6473
TspRI NNCA[CG]TGNN| 1147, 5443, 5587
Tth111I GACN|NNGTC 1823
XbaI T|CTAGA 686
XmnI GAANN|NNTTC 879


Click here to view TAIR data

>AT5G06070 genomic sequence (4081-4761,) length:6536
tcccaatccc aatgccccat ttttcccttt tgtacgtctc tttgtttctt 
50
ccgtgcttga ctacatcttc ccaaggctgt atccaaatat gttttgcaat 
100
gttattggca tttgggtctt agtctgcatt ttctagctca tttggtattt 
150
cgagttccat tagtatatga acacgtttta taaaattaac atcatttctg 
200
taaggaaatg tttaggaaga aggtttcttt aactggtttt aattagaaat 
250
atagtgtcct atttttggaa aacaataata aaatgtggtt cttttgaatg 
300
cgttaaagtt acggagaaaa taaaaactag ctacaatgag gtttgcaagg 
350
gagcacttac aacagtaggt tcaatgttat tggcatatgg gtcatagtcg 
400
ccgacttttt tttggtgttt aattttctta ttttgcgcat ccaacacaat 
450
aagtggcaaa caaagaaagg gccaattata aatataataa tcacagttat 
500
agattgatta aaatcaaatg gacactaaat ttagacattt aggttatcaa 
550
taattattga tctatcaaga caacatagtc gtagatatat ataggggagg 
600
atgattcata acctctatat gactattgtc taatccgacg agtaattggc 
650
gagaaaatgt atttttgatt ttaagtgtgc tggcatctag atgcgggctt 
700
gattaatttc gacatcagac agcgtttgat tccaacaaat gaaaacaact 
750
acatacacag aacaatttaa atattctggt ttttagtgat aaagctaatg 
800
ttatcttgtt atgagatcta ttatgattag caatactaat atattcaaaa 
850
gagagaaaat agcaacaact tcttgaaatc tttctaaatc agaccagaaa 
900
tctatgtgtg gatcggagta atgctaatta ttatagattt tgtataacat 
950
taggctttga tttcctcatt ttacaaaaaa aaaaaaaaaa gactttttta 
1000
tttgttttga tgtataattt ctattcgtat caaatagtat atatctctcg 
1050
gtttgattac taataaggaa agaaaaatct ggattggctt cgataaagaa 
1100
gttcaatgta caaccaagtt gattggagat tgaccttttc taagacactg 
1150
taccttttgt ctgtgtcacc ccatgcaaaa tggctgcatt tgtatcccaa 
1200
ccaattattt atcatttccg taaagcctaa agactattta acagttgaga 
1250
aataaggaaa aaaagactag tttgtcctaa gcatatatat aaatgatttt 
1300
tgaagaaaat ttaaaaggca ctttaagcca ttaaataaaa tatgggcttg 
1350
cccaaaacaa gcatgaaaat gtaggccacg atgcagaccc ccagaaaata 
1400
agctaaatca aattttatat taggagaaga gacactagct agacacgtac 
1450
tggatattat gaaaattcga cgtacatata tgtattccat acaacatata 
1500
tactcgtacc aaaaaaaaaa aacgaaaatg taatttaact atagtgtcta 
1550
atttgtacct tactattcat gagaatattg atcaatcaag tgtaagtaaa 
1600
atactataaa gttataaaaa tgattgatgt ttatctcaaa attgaactct 
1650
tttgcccttc tttcaagaac ttttagtggt ggggcttata aaaaccaacg 
1700
tgatttgtct caatctaaca aaaggtaaaa acataaaaca aaacagagta 
1750
aaagaaaaaA TGGCAAGTCA TGGATCATCT TGTGGAGCAT GCAAGTTTCT 
1800
AAGGAGGAAA TGCAACCGCG ACTGCGTCTT CTCGCCTTAC TTCAGCTACG 
1850
AACAAGCCTC TTCCCATTTC GCAGCGGTTC ACAAAGTCTT CGGCGCAAGT 
1900
AATGTCTCTA AACATTTGCT TCATTTGCCT CAACATCAAA GAAACATCGC 
1950
TGCTATCACC ATCTCCTACG AGGCTCTCTC TCGCATGCGT GATCCTGTTT 
2000
ATGGCTGCGT TGCTCACATC TTCGCTCTTC ATCAACAGgt ctcttaaagt 
2050
tttgaacgat attcttttat tcttgttgag attttagacc atttcaagca 
2100
gtctgatcac gttgcttggt gggtttattt ttttagGTTG TGACTTTGCA 
2150
AGAAGAGATT GAGTTTCTCG GGTCACAGAT GAAGAATTTT TCATACTCTA 
2200
ATCAAAACGG ATCACAACTT AACAACATAC CGGAGTTTGT GAATCAGATG 
2250
ACTATGGCCA CGACCAATTT CGTCGACGAG AGTGTTTTGA ACAATGCCGA 
2300
CGGAAGAAAC TGCTATGATG GGTTCTTCAC GAACTCAGAG GAAATGCTCG 
2350
TGAATCATCA ATGGCTCCAG AACATGGATT ATTATTACTA Agcacaacaa 
2400
aattcgacgc gaactaaaaa cgatggatct atatataata gttgtggagc 
2450
atggttttgt tgttatgata aatctgattt atgttttgta tatcagtctt 
2500
gttatttaca ttcgcgttat ttatcatatg caatttggta aggattaagc 
2550
atatcttaac cctccaatta aagttggatt tctaaaacaa tgtctttagt 
2600
ttttcatttg aggggtctct gtaaaattga ttgtgtacca ttcggttaaa 
2650
ttctaattaa tgtaatatta tactatataa aatgctatta taaattaata 
2700
aagagaatta aattggtata tagtataact atgaactgtc tttccgtcat 
2750
aaaaaacaaa atatatttaa ttttcttaat tattaagatc atataattta 
2800
tcataaaaga tatttcatca ttttgaacaa ttaatctatg tataataaac 
2850
atgtaatcta tatattacaa aaatattcaa ttttctaaat tattttgatc 
2900
ttgggaattc ttggatcttt cttagttatt gttgggcttg aaatatctat 
2950
ataaatccaa tatcaaagtc taaaagtttc ttaggagccc aatggcccat 
3000
ctgaatcgta aaccattgca agcccaaaag cctcttatgt aagtgggttt 
3050
ttcttctatc cgagaaatga tgtgataatg tcttcaatta ttgaaaaggt 
3100
cttggcgtct tgttacgaca ccaaaaaaat aataaaaaaa ttgatgcaac 
3150
aatctcaaca aaattacgaa aacgaagttc atgttttagc ggtttatcac 
3200
attcttcgta taataatcaa aaaatatatt tttgcgttct aattaagtca 
3250
ctttggtttg gatattttgt agtttgtact ccaatctcgt tttgtttatt 
3300
tctctcgtac tgtcttaaaa cccgtaatat ggcgacaatg ataggtagaa 
3350
agaatctctt gacatatgag tccttcaatt aacgtcttga taaaaataat 
3400
ctaaattcca ggcaaatatc tctacttttc atccgtataa taattgtaaa 
3450
taaatcacac gataaattat tgtcagtatc ccacggctcc attgtctaat 
3500
tagctaaatc aatataatta atcataaatc aattgttggg cccctgtacc 
3550
tcacagccac atacatccga tgattccgat gatatatggt gtatatttta 
3600
gactccataa aattgttata aagatttcaa attaaaccat agtttttgtc 
3650
atattattag ctacgtgtta ttagaaaata tcgactctga cttattaatt 
3700
ttgtagactc gtggaaaact taagttgcgt ctggcattaa tttaactatt 
3750
atcaaatcaa aagctcacac caactaatta ttaatatcta aacatttaac 
3800
atgtatagag tgaagacata cgagtaacta aagtaaaaga gaactttccc 
3850
catcaaagcc tctccctatt tactcatggt tctccacgtt gctttctcac 
3900
attcaatgct ttaaccatat agtcatatac acacacacac acacatacct 
3950
ctatctatat gcgtctctct ttatataagt ctacgtgcgt ctaaatctac 
4000
atacttcact actcccacat aaataaacac aaaaaaaaca ctcaccttaa 
4050
cttcttctac tgcatagaaa aatcttacat ATGATGGATA GAGGAGAATG 
4100
CTTGATGTCG ATGAAGCTTA GACCGATGGT GACGAGGCCA TCTTCGGATG 
4150
GGACTTTATT TTGGCCGTTT AGGGAAGAGA GAGCGTTTGC GTCAGCTGAG 
4200
GAGTATGGCG GCGGAGGTGG TTGCATGTGG CCACCGAGGT CTTACTCATG 
4250
CAGCTTTTGC GGGAGAGAGT TCAAGTCGGC GCAAGCACTA GGCGGTCATA 
4300
TGAACGTTCA TCGAAGAGAC CGAGCTCGAC TCAAACAACA ATCATTATCA 
4350
CCTTCATCAA CTGACCAAGC CACACCTCCT GAATGTGATC GTCAACAACA 
4400
AGTTCTTGAT GTGGGATCAA AGGTTCTTGT TCAAGAAGAA ACAAGAAAGC 
4450
CTAACGGAAC CAAGAGGGAG ATAAGTGATG TTTGTAATAA CAACGTTTTA 
4500
GAAAGTTCTA TGAAAAGATA TGAACATGAC AATGGTGAAG TCAAGACTGA 
4550
CTTATCGGTC GGTCTACTGA GTACTGAGTT TGATCCTCGG AAGAAGCAAC 
4600
TAATCAACGG ATCATCTTCG TCATGGAAGA GGGCAAAGAC GGATGTGTCA 
4650
AGATTTCCAA TGATGTTAGG GTTGGTCATT GGAATTTCCG AGATCAACGG 
4700
CCATCATGAG GAGTTGGATC TTGAGCTAAG GCTAGGAGCT GATCCGCCTA 
4750
AGGTTAACTA Gcttaagtaa ttaaaaagta ataatagtta atgtgattgc 
4800
caaaaagaag aagttaaact gtctctaatc tcaagagtga aaagtgagta 
4850
ggttctgtag tgttggcttt gatatagtaa tatatttatc ttatggataa 
4900
agtcaacacg tatagtcttt gctctaattc ataagacaat taaaatattt 
4950
tgattgtttc tttttcttac gaatgatgta actttctcac gatttggttt 
5000
tcaatattta tgcctattcg aaagattttt gattggagtt gccgtaataa 
5050
ttttgaaaag gtctggtgat tggagtgtct tggtgatgac aaacttaaat 
5100
taacactaaa taattggtag gcaaaaaaaa aaataaaaaa atattatcgt 
5150
tgatgaaaat tagtctggta ttccatgtga actcctaata accgtaagag 
5200
aaattagaga cgaattatca taatcttacg atgcaattta agaataagaa 
5250
gaaataagta taaattatat ataacctaac tgaaatcttg ataactgatg 
5300
tatatagcct ataattgggt ggtgacaaat aaaagaagcc tatagttggg 
5350
tatttgggtt ttacttgtaa atagccgtaa cgtaatcaat gtttactata 
5400
agctccaatc taaattaaca tttttacata tattgctgta tcagtggttg 
5450
gcacatgaaa gacagtatat aatcattgtg ttttatatgt ttggaaatag 
5500
taggaacttc aaaaattact tttctaacta gttggcttcg aaattttata 
5550
aatcaataaa actgtatctg gaaacaaata ctgaacagtg ataaatatat 
5600
tttttcatta tttctcttgg taaacaggaa aatggactat caaagtatta 
5650
atgatcgaat taaatagaaa tgtaatgagc atatgcagga acagatgatt 
5700
attgtttgtt cacaccaact tgcatatata tattatatat atgaacatac 
5750
tattacagat gttacatgta tatatataca tattctgttg tgactgtggg 
5800
actagtacca actaagagga gaagggtaaa atctaagtga aggaagtgag 
5850
agtggtcttt taagttttca caatttacac ctcctaatat aaacatacgc 
5900
taacgtttgt atagaagaga gaaatggaat aaatttatat atgtcattta 
5950
aggaaagaaa gagaaagaaa gaatgaaacc gatggttaaa aaggaaaata 
6000
tggtgttaaa agggagaggg catcgaattt caacgttgtc taaaagagga 
6050
aacctcatgg gatatggttt ttgacttaat atatttcgaa gcatcgaaac 
6100
cagactgaac caaaagtcta accaaaaaaa aaaaaaacag agaattaaaa 
6150
aaaactctca gactctgctc tgcaactgca agagaactta actcgacaaa 
6200
aaatgtaaag tgaatgtaaa aggagaataa aaagaattta tgtcatgtaa 
6250
cttgtaacca cctgctgtaa catcatttcc tctttaggaa attcggcttc 
6300
tgaataattc aatgtgctct tatttcattc tttatcattc tcaatttcat 
6350
tctttacttt atttttttct atttggtttt ctctcacttt tattttttaa 
6400
ggtttgaggg taaatatgtt ataaaaatgt ttgtgatgat tttatgattt 
6450
gttttttttg aatttagtct caataattat aaggatatta ttgtaataac 
6500
ctatatctat agttaagaat atatatttca atagtt
6550