fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G06510 NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3)

>AT5G06510.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
KpnI GGTAC|C 253
NcoI C|CATGG 282
PstI CTGCA|G 542
PvuII CAG|CTG 425
StyI C|C[AT][AT]GG 282


Click here to view TAIR data

>AT5G06510.3 length:663
ATGCAAATGT TTGAAGGTGA TTTTATTTAT GCTGTCATTG ATTTAGGTGG 
50
TGAAAAGAGT TCAAGAGATG TGCCAAAGCC TCATGTTGCT TTCGCGATGC 
100
AATCAGCTTG CTTCGAGTTT GGATTTGCTC AGCCAATGAT GTACACAAAG 
150
CATCCTCATG TTGAACAATA CTATGGAGTT GTTTCAGCAT ACGGATCTCA 
200
GAGGTCTTCG GGCCGAGTAA TGATTCCACT GAAGATGGAG ACAGAAGAAG 
250
ATGGTACCAT CTATGTGAAC TCAAAGCAGT ACCATGGAAT TATCAGGCGA 
300
CGCCAGTCCC GAGCAAAGGC TGAAAAACTG AGTAGATGCC GTAAGCCATA 
350
TATGCATCAC TCACGCCATC TCCATGCTAT GCGCCGTCCT AGAGGATCTG 
400
GCGGGCGTTT CTTGAACACC AAGACAGCTG ATGCGGCTAA GCAGTCTAAG 
450
CCGAGTAATT CTCAGAGTTC TGAAGTCTTT CATCCGGAAA ATGAGACCAT 
500
AAACTCATCG AGGGAAGCAA ATGAGTCAAA TCTCTCGGAT TCTGCAGTTA 
550
CAAGTATGGA TTACTTTCTA AGTTCGTCGG CTTATTCTCC TGGTGGCATG 
600
GTCATGCCTA TCAAGTGGAA TGCAGCAGCA ATGGATATTG GCTGCTGCAA 
650
ACTTAATATA TGA
700

>AT5G06510.3 longest ORF length:220
MQMFEGDFIY AVIDLGGEKS SRDVPKPHVA FAMQSACFEF GFAQPMMYTK 
50
HPHVEQYYGV VSAYGSQRSS GRVMIPLKME TEEDGTIYVN SKQYHGIIRR 
100
RQSRAKAEKL SRCRKPYMHH SRHLHAMRRP RGSGGRFLNT KTADAAKQSK 
150
PSNSQSSEVF HPENETINSS REANESNLSD SAVTSMDYFL SSSAYSPGGM 
200
VMPIKWNAAA MDIGCCKLNI 
250