fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G06710 HAT14 homeobox from Arabidopsis thaliana (.1.2)

>AT5G06710.2 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, BtgI, BtrI, BtsI, ClaI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeIII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 90, 317
AciI C|CGC 407
AluI AG|CT 270, 276, 346, 514, 611
ApoI Pu|AATTPy 235, 679, 694
AseI AT|TAAT 70
BamHI G|GATCC 556
BanI G|GPyPuCC 210, 387
BfaI C|TAG 5, 17, 390, 561
BsaHI GPu|CGPyC 210
BsmI GAATGCN| 333
BspT107I(HgiCI) G|G[TC][AG]CC 210, 387
BsrFI Pu|CCGGPy 207
BstF5I GGATGNN| 193
BstYI Pu|GATCPy 111, 258, 556
Bsu36I CC|TNAGG 339
Cac8I GCN|NGC 526
Cfr10I [AG]|CCGG[TC] 207
DdeI C|TNAG 31, 301, 338, 573
DpnI GA-CH3|TC 110, 156, 257, 510, 555
DpnII |GATC 110, 156, 257, 510, 555
DraI TTT|AAA 675
Fnu4HI GC|NGC 345, 407
HaeII PuGCGC|Py 210
HhaI GCG|C 209
HinP1I G|CGC 209
HincII GTPy|PuAC 90, 317
HinfI G|ANTC 577
HpaII C|CGG 206, 410
Hpy188I TCN|GA 102, 228
Hpy99I CG[AT]CG| 88, 181, 424
HpyCH4III ACN|GT 38, 307, 351, 625, 660
HpyCH4IV A|CGT 422
HpyCH4V TG|CA 122
KasI G|GCGCC 210
MboI |GATC 110, 156, 257, 510, 555
MfeI C|AATTG 436
MseI T|TAA 69, 450, 633, 674
MspI C|CGG 206, 410
MwoI GCNNNNN|NNGC 216, 522
NarI GG|CGCC 210
NlaIII CATG| 124
NlaIV GGN|NCC 210, 296, 387, 556
RsaI GT|AC 627
SalI G|TCGAC 90, 317
Sau3AI |GATC 110, 156, 257, 510, 555
SfcI C|TPuPyAG 254
SfoI GGC|GCC 210
Taqƒ¿I T|CGA 62, 89, 316
TseI G|C[AT]GC 345
Tsp45I |GT[CG]AC 151
Tsp509I |AATT 234, 290, 435, 678, 693
XmnI GAANN|NNTTC 40, 698


Click here to view TAIR data

>AT5G06710.2 length:714
ATGGAACTAG CGTTGTCTCT AGGCGACAAT ACTAAGAAAC AGTTCTCTTT 
50
TATGGAGAAG AACTCGAAGA TTAATAATCC CTCTGTCTCG TCGACATCTA 
100
CTTCCGAGAA GGATCTTGGG TTCTGCATGG CTTTAGATGT TGCTTTTGGT 
150
GGTCACAGAT CGTTGTCATC CTCTTCGTCT CCGTCGGTAG AGGATGAGAA 
200
GAAGAAACCG GCGCCCAGAG CAAAAAAATC TGACGAATTT AGGGTTTCGT 
250
CTTCTGTAGA TCCACCATTA CAGCTTCAGC TTCACTTCCC TAATTGGCTC 
300
CCTGAGAACA GTAAAGGTCG ACAAGGAGGA AGAATGCCCT TAGGAGCAGC 
350
TACGGTTGTG GAGGAGGAAG AGGAGGAGGA GGAAGCGGTG CCTAGTATGT 
400
CAGTATCGCC GCCGGATAGT GTAACGTCGT CGTTTCAATT GGACTTTGGG 
450
ATTAAAAGTT ATGGTTATGA GAGAAGAAGC AATAAGAGAG ATATTGATGA 
500
TGAAGTGGAG AGATCAGCTT CAAGAGCCAG CAACGAAGAC AACGATGACG 
550
AGAATGGATC CACTAGGAAG AAACTTAGAC TCTCCAAAGA CCAATCTGCT 
600
TTTCTTGAAG ACAGCTTCAA AGAACACAGT ACCCTTAATC CTGTTCGTGT 
650
CCCATTCTTT ACAGTTTTTA TTTATTTAAA ATTTGTCTTT CTTGAATTTA 
700
TTCTATTTTT TTAG
750

>AT5G06710.2 longest ORF length:237
MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG 
50
GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL 
100
PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG 
150
IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA 
200
FLEDSFKEHS TLNPVRVPFF TVFIYLKFVF LEFILFF
250