fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G06770 KH domain-containing protein / zinc finger (CCCH type) family protein (.1)

>AT5G06770.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 626
NdeI CA|TATG 659
PstI CTGCA|G 206


Click here to view TAIR data

>AT5G06770.1 length:723
ATGGATGCTC GTAAGAGAGG ACGCCCTGAA GCTGCTGCCT CTCACAACTC 
50
CAATGGCGGA TTCAAGAGGT CTAAGCAAGA GATGGAATCA ATTTCAACTG 
100
GTTTAGGAAG CAAATCCAAG CCATGCACTA AATTTTTCAG CACTTCTGGA 
150
TGTCCATTTG GTGACAATTG CCACTTCTTG CACTATGTGC CCGGTGGGTA 
200
CAATGCTGCA GCGCAGATGA CAAATCTCCG ACCACCGGTT TCTCAAGTTT 
250
CCAGAAATAT GCAAGGATCT GGTGGTCCCG GCGGCAGATT CTCAGGGAGA 
300
GGAGATCCAG GATCAGGCCC TGTTTCAATC TTTGGTGCTT CTACTTCCAA 
350
GATCAGTGTA GATGCTTCTT TAGCCGGTGC CATCATTGGA AAAGGTGGAA 
400
TCCATTCCAA ACAGATATGC CGTGAAACAG GAGCAAAATT ATCGATTAAA 
450
GATCATGAAA GAGACCCAAA CTTGAAGATT ATCGAGCTGG AAGGAACATT 
500
TGAACAGATC AATGTAGCGA GTGGGATGGT GAGAGAGCTT ATAGGGAGGC 
550
TTGGATCAGT GAAGAAACCT CAAGGGATTG GTGGTCCTGA AGGGAAACCA 
600
CATCCTGGGA GCAACTACAA AACCAAGATC TGTGATAGGT ACTCTAAAGG 
650
GAACTGTACA TATGGAGATA GATGCCATTT TGCTCATGGT GAATCTGAGC 
700
TGCGCAGGTC AGGAATCGCT TAG
750

>AT5G06770.1 longest ORF length:240
MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG 
50
CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR 
100
GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK 
150
DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP 
200
HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA 
250