fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G06800 myb-like HTH transcriptional regulator family protein (.1.2)

>AT5G06800.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 340, 597
EcoRI G|AATTC 22
NcoI C|CATGG 540
StyI C|C[AT][AT]GG 130, 540, 659


Click here to view TAIR data

>AT5G06800.1 length:1128
ATGATGGATA ACATCAACTT TGAATTCTCA AACGCTTCAC AAGGAAGCCG 
50
GCTACAGTTG CAGCAACAAC CGCCCCAGCC GTTTAATTTA CAAGACTTGA 
100
ATATGATTCA ATACAATCAA CCATCATCTC CTTGGACTAC GGAGACCTTC 
150
TCTGGTCTAA CTCCGTACGA TTGCACAGCC AATCAATCTT TTCCCGTACA 
200
ATGTTCATCT TCAAAACCCT ACCCTTCCTC GTTTCATCCG TACCATCATC 
250
AATCTTCTGA TTCTCCATCA TTAGACCAAT CTGTATCGAT GATTCCTATG 
300
CAGCCTCTTC CGGATCAATA TATGAAGCCA TTATATCAAA GATCTTGCTC 
350
GAACGATTTT GCCGCAACAA ATGCTTCATC AGCCTCTTAC TCGCTTTCTT 
400
TTGAAGCAAG TCATGATCCA CAAGAACTAT GCAGAAGGAC CTATAGTAAT 
450
TCTAATGTAA CACATCTTAA TTTCACATCA TCACAACATC AACCTAAACA 
500
GAGTCATCCA AGATTTTCTT CTCCTCCTTC ATTCTCAATC CATGGAGGGT 
550
CTATGGCTCC TAACTGTGTG AACAAGACAC GGATAAGATG GACTCAAGAT 
600
CTTCATGAGA AGTTTGTGGA GTGCGTTAAT CGTCTTGGTG GCGCTGATAA 
650
GGCGACGCCC AAGGCGATAT TGAAGCGGAT GGATTCTGAT GGACTCACAA 
700
TATTTCACGT TAAAAGCCAC TTACAGAAGT ATAGAATTGC GAAATACATG 
750
CCTGAGTCTC AAGAAGGCAA GTTTGAGAAA AGAGCTTGTG CAAAAGAGCT 
800
GTCTCAGCTT GACACAAGAA CTGGAGTGCA AATTAAAGAG GCACTTCAGC 
850
TTCAACTAGA TGTTCAGAGG CATCTTCATG AACAACTAGA GATTCAACGA 
900
AACCTACAAC TAAGAATCGA AGAACAAGGG AAACAACTGA AAATGATGAT 
950
GGAACAACAA CAAAAAAACA AAGAGAGTCT TCTGAAGAAG CTACCAGACG 
1000
CTGAAGCATC ATTGTCTCTT CTCGATCCCC ATATTCACTC TCCTCCTTCG 
1050
CCTTTCTTGG TACACGACGC TGAAGCCCTG ATGCTAACAA GTTATGAAGA 
1100
CACTCAACTC CAGTCCACCA AAAGTTGA
1150

>AT5G06800.1 longest ORF length:375
MMDNINFEFS NASQGSRLQL QQQPPQPFNL QDLNMIQYNQ PSSPWTTETF 
50
SGLTPYDCTA NQSFPVQCSS SKPYPSSFHP YHHQSSDSPS LDQSVSMIPM 
100
QPLPDQYMKP LYQRSCSNDF AATNASSASY SLSFEASHDP QELCRRTYSN 
150
SNVTHLNFTS SQHQPKQSHP RFSSPPSFSI HGGSMAPNCV NKTRIRWTQD 
200
LHEKFVECVN RLGGADKATP KAILKRMDSD GLTIFHVKSH LQKYRIAKYM 
250
PESQEGKFEK RACAKELSQL DTRTGVQIKE ALQLQLDVQR HLHEQLEIQR 
300
NLQLRIEEQG KQLKMMMEQQ QKNKESLLKK LPDAEASLSL LDPHIHSPPS 
350
PFLVHDAEAL MLTSYEDTQL QSTKS
400