fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G06950 TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4)

>AT5G06950.4 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 598
NcoI C|CATGG 800
PvuII CAG|CTG 545
SacI GAGCT|C 953
SpeI A|CTAGT 78
StyI C|C[AT][AT]GG 800


Click here to view TAIR data

>AT5G06950.4 length:993
ATGGCTGATA CCAGTCCGAG AACTGATGTC TCAACAGATG ACGACACAGA 
50
TCATCCTGAT CTTGGGTCGG AGGGAGCACT AGTGAATACT GCTGCTTCTG 
100
ATTCGAGTGA CCGATCGAAG GGAAAGATGG ATCAAAAGAC TCTTCGTAGG 
150
CTTGCTCAAA ACCGTGAGGC AGCAAGGAAA AGCAGATTGA GGAAGAAGGC 
200
TTATGTTCAG CAGCTAGAGA ACAGCCGCTT GAAACTAACC CAGCTTGAGC 
250
AGGAGCTGCA AAGAGCAAGA CAGCAGGGCG TCTTCATTTC AGGCACAGGA 
300
GACCAGGCCC ATTCTACTGG TGGAAATGGT GCTTTGGCGT TTGATGCTGA 
350
ACATTCACGG TGGTTGGAAG AAAAGAACAA GCAAATGAAC GAGCTGAGGT 
400
CTGCTCTGAA TGCGCATGCA GGTGATTCTG AGCTTCGAAT AATAGTCGAT 
450
GGTGTGATGG CTCACTATGA GGAGCTTTTC AGGATAAAGA GCAATGCAGC 
500
TAAGAATGAT GTCTTTCACT TGCTATCTGG CATGTGGAAA ACACCAGCTG 
550
AGAGATGTTT CTTGTGGCTC GGTGGATTTC GTTCATCCGA ACTTCTAAAG 
600
CTTCTGGCGA ATCAGTTGGA GCCAATGACA GAGAGACAGT TGATGGGCAT 
650
AAATAACCTG CAACAGACAT CGCAGCAGGC TGAAGATGCT TTGTCTCAAG 
700
GGATGGAGAG CTTACAACAG TCACTAGCTG ATACTTTATC GAGCGGGACT 
750
CTTGGTTCAA GTTCATCAGG GAATGTCGCA AGCTACATGG GTCAGATGGC 
800
CATGGCAATG GGAAAGTTAG GTACACTCGA AGGATTTATC CGCCAGGCTG 
850
ATAATTTGAG ACTACAAACA TTGCAACAGA TGATAAGAGT ATTAACAACG 
900
AGACAGTCAG CACGTGCTCT ACTTGCAATA CACGATTACT TCTCACGGCT 
950
ACGAGCTCTA AGCTCCTTAT GGCTTGCTCG ACCCAGAGAG TGA
1000

>AT5G06950.4 longest ORF length:330
MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR 
50
LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG 
100
DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD 
150
GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK 
200
LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT 
250
LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT 
300
RQSARALLAI HDYFSRLRAL SSLWLARPRE 
350