fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G06960 TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2)

>AT5G06960.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, NotI, PacI, PstI, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 598
KpnI GGTAC|C 820
NcoI C|CATGG 800
NdeI CA|TATG 200
NheI G|CTAGC 778
PvuII CAG|CTG 545
SpeI A|CTAGT 10
StyI C|C[AT][AT]GG 800


Click here to view TAIR data

>AT5G06960.2 length:993
ATGGGAGATA CTAGTCCAAG AACATCAGTC TCAACAGATG GAGACACTGA 
50
TCATAATAAC CTAATGTTCG ATGAAGGGCA TTTGGGTATC GGTGCTTCTG 
100
ATTCTAGTGA CCGTTCAAAG AGTAAAATGG ATCAAAAGAC GCTTCGTAGG 
150
CTCGCTCAAA ACCGTGAGGC TGCAAGGAAA AGCAGATTGA GGAAGAAAGC 
200
ATATGTTCAG CAGCTAGAGA ACAGTCGATT GAAGCTAACA CAACTTGAGC 
250
AGGAGCTACA AAGAGCACGG CAACAGGGTG TCTTTATCTC AAGCTCTGGA 
300
GACCAAGCCC ATTCTACCGC TGGAGATGGG GCAATGGCAT TTGATGTAGA 
350
ATACAGACGA TGGCAGGAAG ATAAAAACAG ACAGATGAAG GAGCTGAGTT 
400
CTGCTATAGA TTCTCACGCG ACTGATTCTG AGCTTCGGAT AATTGTAGAT 
450
GGAGTAATAG CTCACTATGA GGAGCTTTAC AGGATAAAAG GCAACGCAGC 
500
TAAGAGTGAT GTCTTCCATT TATTATCAGG GATGTGGAAA ACCCCAGCTG 
550
AGAGATGTTT CTTGTGGCTC GGCGGTTTCC GTTCATCAGA ACTTCTCAAG 
600
CTTATAGCGA GTCAGTTGGA GCCCTTGACA GAACAACAAT CGCTAGACAT 
650
AAATAACTTG CAACAGTCTT CTCAGCAAGC AGAAGATGCT TTGTCTCAAG 
700
GGATGGACAA CTTACAGCAA TCACTCGCTG ATACTTTATC GAGTGGGACT 
750
CTCGGTTCAA GTTCATCAGG GAATGTAGCT AGCTACATGG GTCAGATGGC 
800
CATGGCGATG GGGAAGTTAG GTACCCTTGA AGGATTTATC CGCCAGGCTG 
850
ATAACTTAAG GCTACAAACA TATCAACAGA TGGTGAGACT ATTAACAACC 
900
CGACAATCGG CTCGTGCTCT CCTTGCAGTA CACAATTATA CATTGCGGTT 
950
ACGTGCTCTT AGCTCTCTAT GGCTTGCCAG ACCAAGAGAG TGA
1000

>AT5G06960.2 longest ORF length:330
MGDTSPRTSV STDGDTDHNN LMFDEGHLGI GASDSSDRSK SKMDQKTLRR 
50
LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG 
100
DQAHSTAGDG AMAFDVEYRR WQEDKNRQMK ELSSAIDSHA TDSELRIIVD 
150
GVIAHYEELY RIKGNAAKSD VFHLLSGMWK TPAERCFLWL GGFRSSELLK 
200
LIASQLEPLT EQQSLDINNL QQSSQQAEDA LSQGMDNLQQ SLADTLSSGT 
250
LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT YQQMVRLLTT 
300
RQSARALLAV HNYTLRLRAL SSLWLARPRE 
350