fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G07310 Integrase-type DNA-binding superfamily protein (.1)

>AT5G07310.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 324
EcoRI G|AATTC 6
NcoI C|CATGG 128, 295
PvuII CAG|CTG 311
SacI GAGCT|C 449
SpeI A|CTAGT 469
StyI C|C[AT][AT]GG 128, 295


Click here to view TAIR data

>AT5G07310.1 length:792
ATGGCGAATT CAGGAAATTA TGGAAAGAGG CCCTTTCGAG GCGATGAATC 
50
GGATGAAAAG AAAGAAGCCG ATGATGATGA GAACATATTC CCTTTCTTCT 
100
CTGCCCGATC CCAATATGAC ATGCGTGCCA TGGTCTCAGC CTTGACTCAA 
150
GTCATTGGAA ACCAAAGCAG CTCTCATGAT AATAACCAAC ATCAACCTGT 
200
TGTGTATAAT CAACAAGATC CTAACCCACC GGCTCCTCCA ACTCAAGATC 
250
AAGGGCTATT GAGGAAGAGG CACTATAGAG GGGTAAGACA ACGACCATGG 
300
GGAAAGTGGG CAGCTGAAAT TCGGGATCCG CAAAAGGCAG CACGGGTGTG 
350
GCTCGGGACA TTTGAGACTG CTGAAGCTGC GGCTTTAGCT TATGATAACG 
400
CAGCTCTTAA GTTCAAAGGA AGCAAAGCCA AACTCAATTT CCCTGAGAGA 
450
GCTCAACTAG CAAGTAACAC TAGTACAACT ACCGGTCCAC CAAACTATTA 
500
TTCTTCTAAT AATCAAATTT ACTACTCAAA TCCGCAGACT AATCCGCAAA 
550
CCATACCTTA TTTTAACCAA TACTACTATA ACCAATATCT TCATCAAGGG 
600
GGGAATAGTA ACGATGCATT AAGTTATAGC TTGGCCGGTG GAGAAACCGG 
650
AGGCTCAATG TATAATCATC AGACGTTATC TACTACAAAT TCTTCATCTT 
700
CTGGTGGATC TTCAAGGCAA CAAGATGATG AACAAGATTA CGCCAGATAT 
750
TTGCGTTTTG GGGATTCTTC ACCTCCTAAT TCTGGTTTTT GA
800

>AT5G07310.1 longest ORF length:263
MANSGNYGKR PFRGDESDEK KEADDDENIF PFFSARSQYD MRAMVSALTQ 
50
VIGNQSSSHD NNQHQPVVYN QQDPNPPAPP TQDQGLLRKR HYRGVRQRPW 
100
GKWAAEIRDP QKAARVWLGT FETAEAAALA YDNAALKFKG SKAKLNFPER 
150
AQLASNTSTT TGPPNYYSSN NQIYYSNPQT NPQTIPYFNQ YYYNQYLHQG 
200
GNSNDALSYS LAGGETGGSM YNHQTLSTTN SSSSGGSSRQ QDDEQDYARY 
250
LRFGDSSPPN SGF
300