Locus |
Common name |
Short description |
AT5G07310 |
|
Integrase-type DNA-binding superfamily protein (.1) |
>AT5G07310.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
324 |
EcoRI
| G|AATTC |
6 |
NcoI
| C|CATGG |
128, 295 |
PvuII
| CAG|CTG |
311 |
SacI
| GAGCT|C |
449 |
SpeI
| A|CTAGT |
469 |
StyI
| C|C[AT][AT]GG |
128, 295 |
Click here to view TAIR data
>AT5G07310.1 length:792
ATGGCGAATT CAGGAAATTA TGGAAAGAGG CCCTTTCGAG GCGATGAATC | 50 |
GGATGAAAAG AAAGAAGCCG ATGATGATGA GAACATATTC CCTTTCTTCT | 100 |
CTGCCCGATC CCAATATGAC ATGCGTGCCA TGGTCTCAGC CTTGACTCAA | 150 |
GTCATTGGAA ACCAAAGCAG CTCTCATGAT AATAACCAAC ATCAACCTGT | 200 |
TGTGTATAAT CAACAAGATC CTAACCCACC GGCTCCTCCA ACTCAAGATC | 250 |
AAGGGCTATT GAGGAAGAGG CACTATAGAG GGGTAAGACA ACGACCATGG | 300 |
GGAAAGTGGG CAGCTGAAAT TCGGGATCCG CAAAAGGCAG CACGGGTGTG | 350 |
GCTCGGGACA TTTGAGACTG CTGAAGCTGC GGCTTTAGCT TATGATAACG | 400 |
CAGCTCTTAA GTTCAAAGGA AGCAAAGCCA AACTCAATTT CCCTGAGAGA | 450 |
GCTCAACTAG CAAGTAACAC TAGTACAACT ACCGGTCCAC CAAACTATTA | 500 |
TTCTTCTAAT AATCAAATTT ACTACTCAAA TCCGCAGACT AATCCGCAAA | 550 |
CCATACCTTA TTTTAACCAA TACTACTATA ACCAATATCT TCATCAAGGG | 600 |
GGGAATAGTA ACGATGCATT AAGTTATAGC TTGGCCGGTG GAGAAACCGG | 650 |
AGGCTCAATG TATAATCATC AGACGTTATC TACTACAAAT TCTTCATCTT | 700 |
CTGGTGGATC TTCAAGGCAA CAAGATGATG AACAAGATTA CGCCAGATAT | 750 |
TTGCGTTTTG GGGATTCTTC ACCTCCTAAT TCTGGTTTTT GA | 800 |
>AT5G07310.1 longest ORF length:263
MANSGNYGKR PFRGDESDEK KEADDDENIF PFFSARSQYD MRAMVSALTQ | 50 |
VIGNQSSSHD NNQHQPVVYN QQDPNPPAPP TQDQGLLRKR HYRGVRQRPW | 100 |
GKWAAEIRDP QKAARVWLGT FETAEAAALA YDNAALKFKG SKAKLNFPER | 150 |
AQLASNTSTT TGPPNYYSSN NQIYYSNPQT NPQTIPYFNQ YYYNQYLHQG | 200 |
GNSNDALSYS LAGGETGGSM YNHQTLSTTN SSSSGGSSRQ QDDEQDYARY | 250 |
LRFGDSSPPN SGF | 300 |
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