Locus |
Common name |
Short description |
AT5G07580 |
|
Integrase-type DNA-binding superfamily protein (.1) |
>AT5G07580.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
EcoRI
| G|AATTC |
447, 732 |
NcoI
| C|CATGG |
70 |
NdeI
| CA|TATG |
464 |
StyI
| C|C[AT][AT]GG |
70 |
Click here to view TAIR data
>AT5G07580.1 length:825
ATGACCCCAT CTCTAAAACC ACTAAGAGAG CGACAAAACC ATAGCTTTTT | 50 |
TTTTGTGTCC CTACCCCATC CATGGCTGCT AAAATCTTGT GATTACCTTC | 100 |
TTGTCTCCTT CCTCTTCTCT TTCCCTCTTT TATATAAGAA CCAAAACATC | 150 |
CACAGCTTTT GTTCCATCAT CACTTGCAGA TTCTTTCTCT CTTTCGTAAA | 200 |
AATGGCGAGT TTTGAGGAAA GCTCTGATTT GGAAGCTATA CAGAGCCATC | 250 |
TCTTAGAAGA CTTGTTGGTT TGTGATGGTT TCATGGGAGA TTTTGACTTC | 300 |
GATGCTTCTT TTGTCTCAGG ACTTTGGTGT ATAGAACCAC ACGTTCCTAA | 350 |
ACAAGAACCT GATTCTCCAG TTCTTGATCC GGATTCTTTC GTCAACGAGT | 400 |
TCTTGCAAGT GGAAGGGGAA TCATCATCAT CATCATCACC AGAGCTGAAT | 450 |
TCATCGTCAT CAACATATGA GACTGATCAG AGTGTGAAAA AGGCAGAGAG | 500 |
GTTCGAAGAA GAAGTAGATG CTAGACATTA CCGAGGAGTG AGGCGAAGGC | 550 |
CGTGGGGGAA ATTTGCAGCA GAGATTCGAG ATCCAGCAAA GAAAGGATCA | 600 |
AGAATCTGGC TAGGAACATT TGAGAGTGAT GTTGATGCTG CAAGAGCCTA | 650 |
TGACTGTGCA GCTTTCAAGC TCCGGGGAAG AAAAGCCGTG CTCAACTTCC | 700 |
CTCTTGACGC CGGGAAATAT GAAGCTCCAG CGAATTCAGG AAGGAAAAGG | 750 |
AAGAGAAGTG ATGTGCATGA AGAGCTTCAA AGAACTCAGA GCAATTCATC | 800 |
TTCATCTTCC TGTGATGCAT TTTAG | 850 |
>AT5G07580.1 longest ORF length:274
MTPSLKPLRE RQNHSFFFVS LPHPWLLKSC DYLLVSFLFS FPLLYKNQNI | 50 |
HSFCSIITCR FFLSFVKMAS FEESSDLEAI QSHLLEDLLV CDGFMGDFDF | 100 |
DASFVSGLWC IEPHVPKQEP DSPVLDPDSF VNEFLQVEGE SSSSSSPELN | 150 |
SSSSTYETDQ SVKKAERFEE EVDARHYRGV RRRPWGKFAA EIRDPAKKGS | 200 |
RIWLGTFESD VDAARAYDCA AFKLRGRKAV LNFPLDAGKY EAPANSGRKR | 250 |
KRSDVHEELQ RTQSNSSSSS CDAF | 300 |
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