fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G07580 Integrase-type DNA-binding superfamily protein (.1)

>AT5G07580.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 447, 732
NcoI C|CATGG 70
NdeI CA|TATG 464
StyI C|C[AT][AT]GG 70


Click here to view TAIR data

>AT5G07580.1 length:825
ATGACCCCAT CTCTAAAACC ACTAAGAGAG CGACAAAACC ATAGCTTTTT 
50
TTTTGTGTCC CTACCCCATC CATGGCTGCT AAAATCTTGT GATTACCTTC 
100
TTGTCTCCTT CCTCTTCTCT TTCCCTCTTT TATATAAGAA CCAAAACATC 
150
CACAGCTTTT GTTCCATCAT CACTTGCAGA TTCTTTCTCT CTTTCGTAAA 
200
AATGGCGAGT TTTGAGGAAA GCTCTGATTT GGAAGCTATA CAGAGCCATC 
250
TCTTAGAAGA CTTGTTGGTT TGTGATGGTT TCATGGGAGA TTTTGACTTC 
300
GATGCTTCTT TTGTCTCAGG ACTTTGGTGT ATAGAACCAC ACGTTCCTAA 
350
ACAAGAACCT GATTCTCCAG TTCTTGATCC GGATTCTTTC GTCAACGAGT 
400
TCTTGCAAGT GGAAGGGGAA TCATCATCAT CATCATCACC AGAGCTGAAT 
450
TCATCGTCAT CAACATATGA GACTGATCAG AGTGTGAAAA AGGCAGAGAG 
500
GTTCGAAGAA GAAGTAGATG CTAGACATTA CCGAGGAGTG AGGCGAAGGC 
550
CGTGGGGGAA ATTTGCAGCA GAGATTCGAG ATCCAGCAAA GAAAGGATCA 
600
AGAATCTGGC TAGGAACATT TGAGAGTGAT GTTGATGCTG CAAGAGCCTA 
650
TGACTGTGCA GCTTTCAAGC TCCGGGGAAG AAAAGCCGTG CTCAACTTCC 
700
CTCTTGACGC CGGGAAATAT GAAGCTCCAG CGAATTCAGG AAGGAAAAGG 
750
AAGAGAAGTG ATGTGCATGA AGAGCTTCAA AGAACTCAGA GCAATTCATC 
800
TTCATCTTCC TGTGATGCAT TTTAG
850

>AT5G07580.1 longest ORF length:274
MTPSLKPLRE RQNHSFFFVS LPHPWLLKSC DYLLVSFLFS FPLLYKNQNI 
50
HSFCSIITCR FFLSFVKMAS FEESSDLEAI QSHLLEDLLV CDGFMGDFDF 
100
DASFVSGLWC IEPHVPKQEP DSPVLDPDSF VNEFLQVEGE SSSSSSPELN 
150
SSSSTYETDQ SVKKAERFEE EVDARHYRGV RRRPWGKFAA EIRDPAKKGS 
200
RIWLGTFESD VDAARAYDCA AFKLRGRKAV LNFPLDAGKY EAPANSGRKR 
250
KRSDVHEELQ RTQSNSSSSS CDAF
300