fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G07680 ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2)

>AT5G07680.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AciI C|CGC 459
AluI AG|CT 139, 166, 376, 649, 698
ApoI Pu|AATTPy 904
AvaII G|G[AT]CC 954
BanII GPuGCPy|C 377
BclI T|GATCA 924
BfaI C|TAG 422, 564, 657
BglII A|GATCT 317
BlpI GC|TNAGC 170
BsaAI PyAC|GTPu 628
BsaJI C|CNNGG 123, 175, 324, 869
BsaWI [AT]|CCGG[AT] 777, 952
BsiHKAI G[AT]GC[AT]|C 377
BslI CCNNNNN|NNGG 110, 289, 951
Bsp1286I G[GAT]GC[CAT]|C 377, 631
BsrFI Pu|CCGGPy 283
BsrI ACTGGN| 253
BssKI |CCNGG 54, 559, 868
BstBI TT|CGAA 876
BstNI CC|[AT]GG 54
BstYI Pu|GATCPy 317, 518
BtgI C|CPuPyGG 175
Cfr10I [AG]|CCGG[TC] 283
DdeI C|TNAG 169, 258, 463, 696
DpnI GA-CH3|TC 316, 478, 517, 923, 962
DpnII |GATC 316, 478, 517, 923, 962
HaeIII GG|CC 386
HinfI G|ANTC 541, 585, 728
HpaII C|CGG 282, 558, 776, 867, 951, 956
Hpy188I TCN|GA 248, 257, 322, 538, 762
Hpy99I CG[AT]CG| 529
HpyCH4IV A|CGT 530, 627
HpyCH4V TG|CA 408, 482
MboI |GATC 316, 478, 517, 923, 962
MfeI C|AATTG 675
MseI T|TAA 533, 578
MspI C|CGG 282, 558, 776, 867, 951, 956
MwoI GCNNNNN|NNGC 279
NciI CC|[CG]GG 559, 868
NcoI C|CATGG 175
NlaIII CATG| 174, 410
NlaIV GGN|NCC 556
NsiI ATGCA|T 409
PspGI |CC[AT]GG 54
PstI CTGCA|G 483
RsaI GT|AC 217
RsrII CG|G[AT]CCG 955
SacI GAGCT|C 377
Sau3AI |GATC 316, 478, 517, 923, 962
Sau96I G|GNCC 954
ScrFI CC|NGG 54, 559, 868
SfcI C|TPuPyAG 366, 483
SmlI C|TPyPuAG 278
StyI C|C[AT][AT]GG 123, 175
Taqƒ¿I T|CGA 527, 875
TfiI G|A[AT]TC 541, 585, 728
Tsp509I |AATT 199, 398, 674, 903, 980
XmnI GAANN|NNTTC 546


Click here to view TAIR data

>AT5G07680.1 length:990
ATGGAAACTT TCGGTGTGTT TCACAAGGAA GATGATGAGC AGATGGATTT 
50
GCCTCCTGGT TTTAGGTTTC ATCCAACAGA CGAAGAACTC ATAACCCACT 
100
ATCTCCACAA GAAGGTTCTT GACCTTGGTT TCTCGGCTAA AGCTATTGGT 
150
GAGGTTGATT TGAACAAAGC TGAGCCATGG GAGTTGCCAT ATAAAGCAAA 
200
AATTGGTGAG AAAGAATGGT ACTTTTTCTG TGTGAGGGAT AGAAAGTATC 
250
CGACTGGTCT GAGGACTAAC CGAGCAACTC AAGCCGGTTA TTGGAAGGCG 
300
ACAGGGAAGG ATAAAGAGAT CTTCCGAGGC AAATCGCTTG TTGGTATGAA 
350
GAAAACACTT GTTTTCTACA GAGGAAGAGC TCCTAAAGGC CAGAAAACAA 
400
ATTGGGTGAT GCATGAGTAT AGGCTAGATG GAAAACTCTC TGCTCACAAC 
450
TTGCCTAAAA CCGCTAAGAA TGAATGGGTG ATCTGCAGGG TATTTCATAA 
500
AACTGCTGGA GGTAAGAAGA TCCCGATTTC GACGTTAATC CGAATCGGTT 
550
CTTACGGAAC CGGGTCTAGT TTACCACCTT TAACTGATTC TTCACCATAC 
600
AACGACAAAA CCAAGACCGA ACCAGTTTAC GTGCCCTGCT TCTCCAACCA 
650
AGCTGAAACT AGAGGAACAA TACTCAATTG CTTCAGCAAC CCTTCCCTTA 
700
GCTCCATCCA ACCAGATTTT CTCCAGATGA TTCCACTCTA CCAACCTCAA 
750
TCTCTCAACA TTTCCGAGAG TTCCAATCCG GTTCTTACGC AAGAACAATC 
800
AGTTTTACAA GCGATGATGG AAAACAACAG AAGGCAGAAC TTCAAAACAT 
850
TGAGCATCTC GCAAGAAACC GGGGTTTCGA ACACCGATAA CTCATCGGTT 
900
TTTGAATTTG GGAGGAAGCG ATTTGATCAT CAAGAAGTTC CATCTCCCTC 
950
TTCCGGTCCG GTTGATCTTG AACCTTTCTG GAATTACTGA 
1000

>AT5G07680.1 longest ORF length:329
METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG 
50
EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA 
100
TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN 
150
LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY 
200
NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ 
250
SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV 
300
FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
350