fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G07680 ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2)

>AT5G07680.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AciI C|CGC 417
AluI AG|CT 97, 124, 334, 607, 656
ApoI Pu|AATTPy 862
AvaII G|G[AT]CC 912
BanII GPuGCPy|C 335
BclI T|GATCA 882
BfaI C|TAG 380, 522, 615
BglII A|GATCT 275
BlpI GC|TNAGC 128
BsaAI PyAC|GTPu 586
BsaJI C|CNNGG 81, 133, 282, 827
BsaWI [AT]|CCGG[AT] 735, 910
BsiHKAI G[AT]GC[AT]|C 335
BslI CCNNNNN|NNGG 68, 247, 909
Bsp1286I G[GAT]GC[CAT]|C 335, 589
BsrFI Pu|CCGGPy 241
BsrI ACTGGN| 211
BssKI |CCNGG 12, 517, 826
BstBI TT|CGAA 834
BstNI CC|[AT]GG 12
BstYI Pu|GATCPy 275, 476
BtgI C|CPuPyGG 133
Cfr10I [AG]|CCGG[TC] 241
DdeI C|TNAG 127, 216, 421, 654
DpnI GA-CH3|TC 274, 436, 475, 881, 920
DpnII |GATC 274, 436, 475, 881, 920
HaeIII GG|CC 344
HinfI G|ANTC 499, 543, 686
HpaII C|CGG 240, 516, 734, 825, 909, 914
Hpy188I TCN|GA 206, 215, 280, 496, 720
Hpy99I CG[AT]CG| 487
HpyCH4IV A|CGT 488, 585
HpyCH4V TG|CA 366, 440
MboI |GATC 274, 436, 475, 881, 920
MfeI C|AATTG 633
MseI T|TAA 491, 536
MspI C|CGG 240, 516, 734, 825, 909, 914
MwoI GCNNNNN|NNGC 237
NciI CC|[CG]GG 517, 826
NcoI C|CATGG 133
NlaIII CATG| 132, 368
NlaIV GGN|NCC 514
NsiI ATGCA|T 367
PspGI |CC[AT]GG 12
PstI CTGCA|G 441
RsaI GT|AC 175
RsrII CG|G[AT]CCG 913
SacI GAGCT|C 335
Sau3AI |GATC 274, 436, 475, 881, 920
Sau96I G|GNCC 912
ScrFI CC|NGG 12, 517, 826
SfcI C|TPuPyAG 324, 441
SmlI C|TPyPuAG 236
StyI C|C[AT][AT]GG 81, 133
Taqƒ¿I T|CGA 485, 833
TfiI G|A[AT]TC 499, 543, 686
Tsp509I |AATT 157, 356, 632, 861, 938
XmnI GAANN|NNTTC 504


Click here to view TAIR data

>AT5G07680.2 length:948
ATGGATTTGC CTCCTGGTTT TAGGTTTCAT CCAACAGACG AAGAACTCAT 
50
AACCCACTAT CTCCACAAGA AGGTTCTTGA CCTTGGTTTC TCGGCTAAAG 
100
CTATTGGTGA GGTTGATTTG AACAAAGCTG AGCCATGGGA GTTGCCATAT 
150
AAAGCAAAAA TTGGTGAGAA AGAATGGTAC TTTTTCTGTG TGAGGGATAG 
200
AAAGTATCCG ACTGGTCTGA GGACTAACCG AGCAACTCAA GCCGGTTATT 
250
GGAAGGCGAC AGGGAAGGAT AAAGAGATCT TCCGAGGCAA ATCGCTTGTT 
300
GGTATGAAGA AAACACTTGT TTTCTACAGA GGAAGAGCTC CTAAAGGCCA 
350
GAAAACAAAT TGGGTGATGC ATGAGTATAG GCTAGATGGA AAACTCTCTG 
400
CTCACAACTT GCCTAAAACC GCTAAGAATG AATGGGTGAT CTGCAGGGTA 
450
TTTCATAAAA CTGCTGGAGG TAAGAAGATC CCGATTTCGA CGTTAATCCG 
500
AATCGGTTCT TACGGAACCG GGTCTAGTTT ACCACCTTTA ACTGATTCTT 
550
CACCATACAA CGACAAAACC AAGACCGAAC CAGTTTACGT GCCCTGCTTC 
600
TCCAACCAAG CTGAAACTAG AGGAACAATA CTCAATTGCT TCAGCAACCC 
650
TTCCCTTAGC TCCATCCAAC CAGATTTTCT CCAGATGATT CCACTCTACC 
700
AACCTCAATC TCTCAACATT TCCGAGAGTT CCAATCCGGT TCTTACGCAA 
750
GAACAATCAG TTTTACAAGC GATGATGGAA AACAACAGAA GGCAGAACTT 
800
CAAAACATTG AGCATCTCGC AAGAAACCGG GGTTTCGAAC ACCGATAACT 
850
CATCGGTTTT TGAATTTGGG AGGAAGCGAT TTGATCATCA AGAAGTTCCA 
900
TCTCCCTCTT CCGGTCCGGT TGATCTTGAA CCTTTCTGGA ATTACTGA
950

>AT5G07680.2 longest ORF length:315
MDLPPGFRFH PTDEELITHY LHKKVLDLGF SAKAIGEVDL NKAEPWELPY 
50
KAKIGEKEWY FFCVRDRKYP TGLRTNRATQ AGYWKATGKD KEIFRGKSLV 
100
GMKKTLVFYR GRAPKGQKTN WVMHEYRLDG KLSAHNLPKT AKNEWVICRV 
150
FHKTAGGKKI PISTLIRIGS YGTGSSLPPL TDSSPYNDKT KTEPVYVPCF 
200
SNQAETRGTI LNCFSNPSLS SIQPDFLQMI PLYQPQSLNI SESSNPVLTQ 
250
EQSVLQAMME NNRRQNFKTL SISQETGVSN TDNSSVFEFG RKRFDHQEVP 
300
SPSSGPVDLE PFWNY
350