fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G08070 TCP17 TCP domain protein 17 (.1)

>AT5G08070.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 456
HindIII A|AGCTT 377, 475
KpnI GGTAC|C 653
SmaI CCC|GGG 343
StyI C|C[AT][AT]GG 327, 525


Click here to view TAIR data

>AT5G08070.1 length:729
ATGGGAATAA AAAAAGAAGA TCAGAAAAGT TCCTTGTCCT TGTTGACGCA 
50
ACGATGGAAT AATCCGAGGA TCGTGCGAGT CTCCCGAGCA TTTGGAGGCA 
100
AAGATAGACA CAGCAAAGTG TGCACAGTTC GTGGTCTCCG AGACAGGAGG 
150
ATAAGGTTGT CGGTGATGAC AGCGATCCAA GTCTACGACC TTCAAGAACG 
200
ATTAGGGCTG AGTCAGCCTA GCAAAGTCAT TGATTGGCTC TTAGAAGTTG 
250
CCAAAAACGA CGTCGATTTG CTTCCTCCTT TGCAATTCCC ACCTGGTTTT 
300
CACCAACTTA ACCCTAATCT CACCGGCCTT GGAGAATCTT TTCCCGGGGT 
350
CTTCGATCTT GGAAGAACAC AGAGAGAAGC TTTGGATCTT GAGAAAAGGA 
400
AATGGGTTAA TCTTGATCAT GTGTTTGATC ACATCGATCA TCACAACCAT 
450
TTCTCGAATT CAATCCAGAG CAACAAGCTT TATTTCCCTA CAATTACTTC 
500
GTCTAGCAGC TCTTATCACT ACAACCTTGG ACATCTCCAA CAGTCACTAC 
550
TAGACCAATC TGGTAACGTC ACTGTCGCAT TTTCTAATAA CTATAATAAT 
600
AATAATCTCA ATCCTCCGGC GGCGGAAACT ATGAGTTCTC TATTCCCAAC 
650
AAGGTACCCT TCGTTTCTCG GTGGTGGTCA ACTTCAACTC TTTAGTAGCA 
700
CAAGCTCACA ACCAGACCAT ATCGAGTAG
750

>AT5G08070.1 longest ORF length:242
MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR 
50
IRLSVMTAIQ VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF 
100
HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH 
150
FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN 
200
NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE
250