fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G08130 BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>AT5G08130.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 39, 1059
NdeI CA|TATG 238
SacI GAGCT|C 1105
StyI C|C[AT][AT]GG 469, 651


Click here to view TAIR data

>AT5G08130.1 length:1230
ATGATGTTCA ATGCTAATGA GAGAAACGTT TTGGATGAGA ATTCTAACTC 
50
TAATTGCAGC TCGTACGCCG CTGCATCAAG CGGGTTCACT CTGTGGGATG 
100
AATCTGCTTC TGGGAAGAAG GGACAGACAA GGAAGGAGAA TAGTGTTGGG 
150
GAGAGAGTAA ACATGAGAGC TGATGTTGCA GCAACTGTGG GACAATGGCC 
200
AGTGGCGGAG AGACGGTCCC AGTCTTTGAC AAACAACCAT ATGAGCGGTT 
250
TCAGTTCTCT CTCTTCCTCT CAAGGGTCTG TGCTTAAGAG CCAGAGCTTC 
300
ATGGACATGA TAAGGTCAGC AAAAGGAAGT TCACAGGAAG ATGATTTAGA 
350
TGATGAAGAA GATTTTATCA TGAAGAAAGA AAGCTCCTCG ACTAGCCAGA 
400
GCCATAGAGT GGATTTGAGG GTAAAAGCAG ATGTGAGAGG CTCTCCTAAC 
450
GATCAAAAGC TGAACACACC TAGGTCTAAA CATTCTGCTA CAGAGCAACG 
500
GAGAAGGAGC AAGATCAATG ATAGATTTCA GATGTTGAGA CAACTAATAC 
550
CTAACAGCGA CCAAAAGCGG GATAAGGCCT CCTTCTTACT AGAGGTTATC 
600
GAGTATATTC AATTCTTACA AGAGAAAGCA GACAAGTATG TGACCTCTTA 
650
CCAAGGATGG AATCACGAAC CTGCGAAGCT ATTGAATTGG CAGAGTAACA 
700
ACAACCAACA GCTAGTACCT GAAGGAGTTG CTTTTGCTCC AAAATTGGAA 
750
GAAGAGAAAA ACAACATTCC GGTTTCGGTC CTTGCAACTG CACAAGGTGT 
800
TGTTATTGAT CATCCAACAA CCGCGACGAC CTCTCCATTT CCATTGTCGA 
850
TTCAAAGCAA CAGTTTTTTC TCTCCTGTGA TTGCGGGTAA TCCCGTACCC 
900
CAGTTCCACG CAAGAGTCGC ATCATCAGAG GCTGTAGAGC CAAGTCCGAG 
950
TTCCCGGAGT CAAAAAGAAG AAGAAGATGA GGAAGTTCTT GAGGGTAACA 
1000
TCAGAATTTC AAGTGTTTAC TCACAAGGAT TAGTGAAAAC ACTGAGAGAA 
1050
GCATTGGAGA ATTCAGGAGT GGACTTAACG AAAGCAAGCA TCTCCGTTGA 
1100
AATCGAGCTC GCTAAACAAT CCTCGTCTTC TTCCTTCAAG GATCATGAAG 
1150
TTCGTGAACC GGTTTCTCGA ACCAGAAACG ACAATGTCAA GCAAACTCGG 
1200
AAACCAAAAC GGCTCAAGAC GGGACAGTAG 
1250

>AT5G08130.1 longest ORF length:409
MMFNANERNV LDENSNSNCS SYAAASSGFT LWDESASGKK GQTRKENSVG 
50
ERVNMRADVA ATVGQWPVAE RRSQSLTNNH MSGFSSLSSS QGSVLKSQSF 
100
MDMIRSAKGS SQEDDLDDEE DFIMKKESSS TSQSHRVDLR VKADVRGSPN 
150
DQKLNTPRSK HSATEQRRRS KINDRFQMLR QLIPNSDQKR DKASFLLEVI 
200
EYIQFLQEKA DKYVTSYQGW NHEPAKLLNW QSNNNQQLVP EGVAFAPKLE 
250
EEKNNIPVSV LATAQGVVID HPTTATTSPF PLSIQSNSFF SPVIAGNPVP 
300
QFHARVASSE AVEPSPSSRS QKEEEDEEVL EGNIRISSVY SQGLVKTLRE 
350
ALENSGVDLT KASISVEIEL AKQSSSSSFK DHEVREPVSR TRNDNVKQTR 
400
KPKRLKTGQ
450