fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G08190 NF-YB12 "nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2)

>AT5G08190.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 3
BglII A|GATCT 120
HindIII A|AGCTT 230
XhoI C|TCGAG 401


Click here to view TAIR data

>AT5G08190.1 length:492
ATGGATCCGA TGGATATAGT TGGAAAATCA AAGGAAGATG CTTCGCTTCC 
50
GAAAGCTACC ATGACGAAAA TTATAAAGGA GATGTTACCC GCAGATGTTC 
100
GTGTTGCTAG AGATGCTCAA GATCTATTGA TTGAGTGTTG TGTAGAGTTC 
150
ATAAATCTTA TATCGTCGGA GTCGAATGAA GTGTGTAACA AAGAGGATAA 
200
ACGAACAATA GCCCCTGAGC ACGTACTCAA AGCTTTACAG GTTCTTGGCT 
250
TTGGGGAATA CGTAGAAGAA GTTTATGCCG CGTATGAGCA ACATAAATAT 
300
GAAACCATGC AGGATTCGCA GAGAAGTGTG AAGATGAATA GCGGAGCAGA 
350
GATGACGGAA GAAGAGGCGG CAGCGGAACA ACAGAGGATG TTTGCAGAAG 
400
CTCGAGCAAG AATGAATGGA GGTGTTACAG TTCCTCAACC AGAGCAACTA 
450
GAAGAACCCC AACAACAACA ACAAACAAGT CTACAAAGCT AA
500

>AT5G08190.1 longest ORF length:163
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF 
50
INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY 
100
ETMQDSQRSV KMNSGAEMTE EEAAAEQQRM FAEARARMNG GVTVPQPEQL 
150
EEPQQQQQTS LQS
200