Locus |
Common name |
Short description |
AT5G08190 |
NF-YB12 |
"nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2) |
>AT5G08190.2 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
3 |
BglII
| A|GATCT |
120 |
HindIII
| A|AGCTT |
230 |
NcoI
| C|CATGG |
305 |
StyI
| C|C[AT][AT]GG |
305 |
XhoI
| C|TCGAG |
398 |
Click here to view TAIR data
>AT5G08190.2 length:489
ATGGATCCGA TGGATATAGT TGGAAAATCA AAGGAAGATG CTTCGCTTCC | 50 |
GAAAGCTACC ATGACGAAAA TTATAAAGGA GATGTTACCC GCAGATGTTC | 100 |
GTGTTGCTAG AGATGCTCAA GATCTATTGA TTGAGTGTTG TGTAGAGTTC | 150 |
ATAAATCTTA TATCGTCGGA GTCGAATGAA GTGTGTAACA AAGAGGATAA | 200 |
ACGAACAATA GCCCCTGAGC ACGTACTCAA AGCTTTACAG GTTCTTGGCT | 250 |
TTGGGGAATA CGTAGAAGAA GTTTATGCCG CGTATGAGCA ACATAAATAT | 300 |
GAAACCATGG ATTCGCAGAG AAGTGTGAAG ATGAATAGCG GAGCAGAGAT | 350 |
GACGGAAGAA GAGGCGGCAG CGGAACAACA GAGGATGTTT GCAGAAGCTC | 400 |
GAGCAAGAAT GAATGGAGGT GTTACAGTTC CTCAACCAGA GCAACTAGAA | 450 |
GAACCCCAAC AACAACAACA AACAAGTCTA CAAAGCTAA | 500 |
>AT5G08190.2 longest ORF length:162
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF | 50 |
INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY | 100 |
ETMDSQRSVK MNSGAEMTEE EAAAEQQRMF AEARARMNGG VTVPQPEQLE | 150 |
EPQQQQQTSL QS | 200 |
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