fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G08190 NF-YB12 "nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2)

>AT5G08190.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 3
BglII A|GATCT 120
HindIII A|AGCTT 230
NcoI C|CATGG 305
StyI C|C[AT][AT]GG 305
XhoI C|TCGAG 398


Click here to view TAIR data

>AT5G08190.2 length:489
ATGGATCCGA TGGATATAGT TGGAAAATCA AAGGAAGATG CTTCGCTTCC 
50
GAAAGCTACC ATGACGAAAA TTATAAAGGA GATGTTACCC GCAGATGTTC 
100
GTGTTGCTAG AGATGCTCAA GATCTATTGA TTGAGTGTTG TGTAGAGTTC 
150
ATAAATCTTA TATCGTCGGA GTCGAATGAA GTGTGTAACA AAGAGGATAA 
200
ACGAACAATA GCCCCTGAGC ACGTACTCAA AGCTTTACAG GTTCTTGGCT 
250
TTGGGGAATA CGTAGAAGAA GTTTATGCCG CGTATGAGCA ACATAAATAT 
300
GAAACCATGG ATTCGCAGAG AAGTGTGAAG ATGAATAGCG GAGCAGAGAT 
350
GACGGAAGAA GAGGCGGCAG CGGAACAACA GAGGATGTTT GCAGAAGCTC 
400
GAGCAAGAAT GAATGGAGGT GTTACAGTTC CTCAACCAGA GCAACTAGAA 
450
GAACCCCAAC AACAACAACA AACAAGTCTA CAAAGCTAA
500

>AT5G08190.2 longest ORF length:162
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF 
50
INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY 
100
ETMDSQRSVK MNSGAEMTEE EAAAEQQRMF AEARARMNGG VTVPQPEQLE 
150
EPQQQQQTSL QS
200