fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G08330 AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1)

>AT5G08330.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
HindIII A|AGCTT 569
HpaI GTT|AAC 381
PvuII CAG|CTG 587
SacI GAGCT|C 494
XhoI C|TCGAG 158


Click here to view TAIR data

>AT5G08330.1 length:720
ATGGCCGACA ACGACGGAGC AGTGAGTAAC GGCATCATAG TCGAGCAGAC 
50
GTCAAACAAA GGACCTCTTA ACGCCGTTAA GAAACCACCG TCTAAAGATC 
100
GACACAGCAA AGTTGACGGA AGAGGAAGAA GGATTCGTAT GCCAATCATT 
150
TGCGCAGCTC GAGTTTTTCA ATTGACCAGA GAGTTAGGTC ACAAGTCCGA 
200
TGGTCAAACC ATAGAGTGGC TTCTCCGTCA AGCTGAGCCT TCTATCATAG 
250
CCGCCACTGG AACTGGCACT ACTCCGGCGA GTTTCTCCAC TGCTTCTCTC 
300
TCCACTTCTT CTCCGTTTAC TCTCGGGAAA CGTGTCGTCA GAGCGGAGGA 
350
AGGAGAATCC GGCGGCGGAG GAGGAGGAGG GTTAACAGTG GGACACACAA 
400
TGGGGACTTC GTTAATGGGT GGTGGTGGTT CTGGTGGGTT TTGGGCTGTT 
450
CCGGCGAGGC CGGATTTCGG ACAAGTCTGG AGCTTTGCAA CCGGAGCTCC 
500
ACCGGAAATG GTTTTTGCGC AGCAGCAGCA ACCAGCTACA CTCTTCGTCC 
550
GCCACCAGCA GCAACAGCAA GCTTCCGCCG CCGCAGCAGC TGCAATGGGT 
600
GAGGCTTCAG CAGCTAGAGT TGGGAATTAT CTTCCGGGTC ATCATCTCAA 
650
TTTGCTTGCT TCTTTGTCTG GTGGAGCTAA CGGGTCGGGT CGGAGGGAAG 
700
ACGACCACGA ACCACGTTGA 
750

>AT5G08330.1 longest ORF length:239
MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII 
50
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL 
100
STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV 
150
PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG 
200
EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
250