Locus |
Common name |
Short description |
AT5G08330 |
AtTCP11, CHE, TCP21 |
TCP domain protein 11, TCP family transcription factor (.1) |
>AT5G08330.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, StyI, XbaI
Name |
Recognition sequence |
Cut positions |
HindIII
| A|AGCTT |
569 |
HpaI
| GTT|AAC |
381 |
PvuII
| CAG|CTG |
587 |
SacI
| GAGCT|C |
494 |
XhoI
| C|TCGAG |
158 |
Click here to view TAIR data
>AT5G08330.1 length:720
ATGGCCGACA ACGACGGAGC AGTGAGTAAC GGCATCATAG TCGAGCAGAC | 50 |
GTCAAACAAA GGACCTCTTA ACGCCGTTAA GAAACCACCG TCTAAAGATC | 100 |
GACACAGCAA AGTTGACGGA AGAGGAAGAA GGATTCGTAT GCCAATCATT | 150 |
TGCGCAGCTC GAGTTTTTCA ATTGACCAGA GAGTTAGGTC ACAAGTCCGA | 200 |
TGGTCAAACC ATAGAGTGGC TTCTCCGTCA AGCTGAGCCT TCTATCATAG | 250 |
CCGCCACTGG AACTGGCACT ACTCCGGCGA GTTTCTCCAC TGCTTCTCTC | 300 |
TCCACTTCTT CTCCGTTTAC TCTCGGGAAA CGTGTCGTCA GAGCGGAGGA | 350 |
AGGAGAATCC GGCGGCGGAG GAGGAGGAGG GTTAACAGTG GGACACACAA | 400 |
TGGGGACTTC GTTAATGGGT GGTGGTGGTT CTGGTGGGTT TTGGGCTGTT | 450 |
CCGGCGAGGC CGGATTTCGG ACAAGTCTGG AGCTTTGCAA CCGGAGCTCC | 500 |
ACCGGAAATG GTTTTTGCGC AGCAGCAGCA ACCAGCTACA CTCTTCGTCC | 550 |
GCCACCAGCA GCAACAGCAA GCTTCCGCCG CCGCAGCAGC TGCAATGGGT | 600 |
GAGGCTTCAG CAGCTAGAGT TGGGAATTAT CTTCCGGGTC ATCATCTCAA | 650 |
TTTGCTTGCT TCTTTGTCTG GTGGAGCTAA CGGGTCGGGT CGGAGGGAAG | 700 |
ACGACCACGA ACCACGTTGA | 750 |
>AT5G08330.1 longest ORF length:239
MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII | 50 |
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL | 100 |
STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV | 150 |
PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG | 200 |
EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR | 250 |
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