fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G08520 Duplicated homeodomain-like superfamily protein (.1)

>AT5G08520.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
PstI CTGCA|G 116
SacI GAGCT|C 65
SpeI A|CTAGT 547


Click here to view TAIR data

>AT5G08520.1 length:897
ATGACGGTGG AGGAAGTTAG TGATGGTTCT GTGTGGAGTA GGGAGGATGA 
50
TATTGCCTTT GAGAGAGCTC TAGCCAATAA TACCGATGAA TCAGAGGAAC 
100
GGTGGGAGAA GATTGCTGCA GACGTTCCAG GCAAAAGTGT TGAACAGATT 
150
AAAGAACATT ACGAGCTTTT AGTTGAAGAT GTTACTAGGA TTGAATCAGG 
200
ATGTGTGCCT CTTCCTGCCT ATGGGTCTCC TGAAGGATCG AATGGCCATG 
250
CTGGTGATGA AGGAGCAAGT AGTAAGAAAG GAGGTAACAG TCATGCGGGA 
300
GAGTCTAACC AAGCAGGTAA ATCAAAGTCC GATCAAGAAC GACGAAAGGG 
350
TATCGCGTGG ACAGAAGATG AGCACAGGTT ATTTCTTCTT GGTTTGGATA 
400
AGTACGGGAA AGGTGATTGG CGTAGCATTT CTCGCAACTT TGTAGTAACA 
450
AGAACACCGA CCCAAGTTGC GAGCCATGCT CAAAAGTATT TCATTCGTCT 
500
AAATTCAATG AACAAAGACA GAAGGCGATC AAGCATTCAC GACATCACTA 
550
GTGTTGGCAA CGCAGATGTC TCAACGCCAC AAGGACCAAT CACTGGTCAG 
600
AACAACAGCA ATAACAACAA CAACAACAAC AACAACAACA GTTCTCCTGC 
650
TGTTGCTGGA GGAGGAAACA AATCAGCCAA GCAAGCCGTC TCTCAAGCAC 
700
CACCTGGACC TCCTATGTAT GGAACACCCG CCATAGGTCA GCCAGCAGTT 
750
GGAACACCAG TGAACCTCCC AGCTCCACCT CACATGGCTT ATGGAGTTCA 
800
TGCGGCTCCA GTCCCTGGCT CAGTGGTTCC TGGTGCAGCA ATGAACATTG 
850
GTCAAATGCC GTACACCATG CCGCGTACAC CAACGGCTCA TAGGTAA
900

>AT5G08520.1 longest ORF length:298
MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI 
50
KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG 
100
ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT 
150
RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ 
200
NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV 
250
GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
300