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| Locus | Common name | Short description |
| AT5G08710 | RUG1 | RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) |
>AT5G08710.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspHI, BspMI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, Cfr10I, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MspI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 1053, 1201 |
| AciI | C|CGC | 374, 435 |
| AflII | C|TTAAG | 693 |
| AflIII | A|CPuPyGT | 467, 528, 931 |
| AluI | AG|CT | 253, 271, 418, 492, 547, 954, 1093 |
| AlwNI | CAGNNN|CTG | 602 |
| ApoI | Pu|AATTPy | 29 |
| AvaII | G|G[AT]CC | 93, 1038 |
| BalI | TGG|CCA | 660 |
| BamHI | G|GATCC | 372 |
| BanI | G|GPyPuCC | 986 |
| BanII | GPuGCPy|C | 187, 272, 645, 969 |
| BclI | T|GATCA | 240 |
| BfaI | C|TAG | 6, 392 |
| BsaAI | PyAC|GTPu | 527 |
| BsaBI | GATNN|NNATC | 123 |
| BsaJI | C|CNNGG | 575, 663, 718, 965, 990, 1121, 1188 |
| BsiHKAI | G[AT]GC[AT]|C | 272 |
| BslI | CCNNNNN|NNGG | 298, 632, 1126 |
| Bsp1286I | G[GAT]GC[CAT]|C | 187, 272, 645, 969 |
| BspDI | AT|CGAT | 876 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 986 |
| BsrBI | GAG|CGG | 135 |
| BsrDI | GCAATGNN| | 1221 |
| BsrI | ACTGGN| | 501 |
| BssKI | |CCNGG | 964, 1120 |
| BstBI | TT|CGAA | 26, 84 |
| BstEII | G|GTNACC | 668 |
| BstNI | CC|[AT]GG | 964, 1120 |
| BstYI | Pu|GATCPy | 372, 1135 |
| BtgI | C|CPuPyGG | 575, 663, 1188 |
| BtsI | GCAGTGNN| | 1251 |
| Cac8I | GCN|NGC | 262, 784 |
| ClaI | AT|CGAT | 876 |
| DdeI | C|TNAG | 205, 627, 1063 |
| DpnI | GA-CH3|TC | 51, 239, 371, 742, 1134 |
| DpnII | |GATC | 51, 239, 371, 742, 1134 |
| DraI | TTT|AAA | 75 |
| EaeI | Py|GGCCPu | 660 |
| EcoO109I | PuG|GNCCPy | 1039 |
| EcoRI | G|AATTC | 29 |
| Fnu4HI | GC|NGC | 150, 265, 438, 513, 762, 773, 1092, 1281 |
| HaeIII | GG|CC | 659, 1184 |
| HincII | GTPy|PuAC | 3, 335 |
| HinfI | G|ANTC | 44, 81, 201, 304, 999, 1050 |
| Hpy188I | TCN|GA | 16, 95, 190, 348, 588, 817, 1101 |
| HpyCH4III | ACN|GT | 244, 447, 664, 703, 1056 |
| HpyCH4IV | A|CGT | 526, 1004 |
| HpyCH4V | TG|CA | 310, 408, 514, 552, 774, 785, 898, 910, 1090, 1207, 1251 |
| MboI | |GATC | 51, 239, 371, 742, 1134 |
| MfeI | C|AATTG | 1180 |
| MscI | TGG|CCA | 660 |
| MseI | T|TAA | 74, 321, 354, 692 |
| MslI | CAPyNN|NNPuTG | 932, 1193 |
| MspA1I | C[AC]G|C[GT]G | 254, 419, 437 |
| MwoI | GCNNNNN|NNGC | 1215 |
| N.BstNBI | GAGTCNNNN|N | 309, 1055 |
| NcoI | C|CATGG | 1188 |
| NdeI | CA|TATG | 896 |
| NlaIII | CATG| | 362, 466, 554, 783, 811, 912, 930, 1187 |
| NlaIV | GGN|NCC | 93, 372, 986 |
| NspI | PuCATG|Py | 467, 784, 913, 931 |
| PciI | A|CATGT | 467, 931 |
| PpuMI | PuG|G[AT]CCPy | 1039 |
| PspGI | |CC[AT]GG | 964, 1120 |
| PstI | CTGCA|G | 1091 |
| PvuII | CAG|CTG | 254, 419 |
| RsaI | GT|AC | 60, 524, 530, 890 |
| SacI | GAGCT|C | 272 |
| Sau3AI | |GATC | 51, 239, 371, 742, 1134 |
| Sau96I | G|GNCC | 93, 1038, 1184 |
| ScrFI | CC|NGG | 964, 1120 |
| SfcI | C|TPuPyAG | 111, 1091 |
| SmlI | C|TPyPuAG | 234, 483, 693, 736 |
| SphI | GCATG|C | 784 |
| StyI | C|C[AT][AT]GG | 718, 990, 1188 |
| Taqƒ¿I | T|CGA | 25, 38, 53, 83, 125, 875 |
| TfiI | G|A[AT]TC | 44, 81, 201, 999 |
| TseI | G|C[AT]GC | 438, 513, 762, 773, 1092, 1281 |
| Tsp45I | |GT[CG]AC | 667, 750 |
| Tsp509I | |AATT | 28, 56, 87, 1179 |
| TspRI | NNCA[CG]TGNN| | 209, 706, 790, 886, 1090, 1251 |
| XcmI | CCANNNNN|NNNNTGG | 575 |
| XmnI | GAANN|NNTTC | 999 |
Click here to view TAIR data
>AT5G08710.1 length:1305
ATGTTGACTA GAGCCATCGG ACGAGTTCGA ATTCCTGTGT CGAGGATTCA | 50 |
GGGATCGAAT TGTACGAGTG GGCTTTTAAA AGATTCGAAA TTGGGTCCGA | 100 |
TTGGTGTTTG CTGTAGCAGA TGGGTATCGA GCGAGAGCGG GAAACGATTT | 150 |
GCGGCGATGT GGGGAAGTGG AGATTACGGC AGATTAGGGC TCGGAAACTT | 200 |
GGATTCTCAG TGGACACCTG CCGTTTGCTC TGCCTTGAGT GATCACAGTA | 250 |
TCACAGCTGT CGCTTGCGGC GGAGCTCACA CTCTGTTTCT CACCGAAACG | 300 |
AGGAGAGTCT TTGCAACGGG TCTTAATGAT TGTGGTCAAC TTGGCGTATC | 350 |
AGATGTTAAA AGTCATGCTA TGGATCCGCT TGAAGTTTCT GGACTAGATA | 400 |
AGGATATTCT GCACATTTCA GCTGGTTATT ATCACTCCGC TGCTATTACA | 450 |
GTTGATGGAG AACTCTACAT GTGGGGAAAG AACTCAAGTG GACAGCTTGG | 500 |
ACTGGGAAAA AAGGCTGCAA GAGTGGTACG TGTACCAACT AAAGTGGAAG | 550 |
CTCTGCATGG CATCACCATA CAATCCGTGG CTTTGGGTTC AGAGCATTCA | 600 |
GTTGCTGTTA CTGATGGAGG TGAAGTCCTG AGTTGGGGAG GAGGGGGCTC | 650 |
TGGAAGACTT GGCCACGGTC ACCAGTCCAG TCTTTTTGGC ATCTTAAGAA | 700 |
GTAACAGTGA GTTTACTCCA AGGCTTATCA AGGAACTTGA GGGGATCAAG | 750 |
GTCACAAATG TTGCTGCTGG TCTGCTGCAT TCAGCATGCA CTGATGAGAA | 800 |
TGGCTCTGCT TTCATGTTCG GAGAGAAATC TATAAACAAG ATGGGCTTTG | 850 |
GAGGAGTAAG AAATGCCACA ACACCATCGA TTATCAGTGA AGTACCATAT | 900 |
GCAGAAGAAG TTGCATGTGG TGGCTACCAC ACATGTGTAG TTACAAGAGG | 950 |
TGGGGAGCTT TACACCTGGG GCTCAAACGA AAATGGGTGC CTTGGAACAG | 1000 |
ATTCAACGTA TGTCTCACAC TCCCCTGTGA GAGTTGAAGG TCCTTTCTTG | 1050 |
GAGTCTACTG TATCTCAGGT ATCTTGTGGG TGGAAGCACA CTGCAGCTAT | 1100 |
TTCAGATAAC AATGTCTTCA CCTGGGGCTG GGGAGGATCT CACGGCACAT | 1150 |
TCTCTGTTGA TGGACATTCC TCTGGTGGAC AATTGGGCCA TGGTAGTGAT | 1200 |
GTAGACTATG CAAGACCAGC AATGGTGGAC TTGGGAAAGA ATGTAAGAGC | 1250 |
AGTGCATATA TCTTGTGGCT TCAATCATAC AGCAGCAGTT CTTGAACATT | 1300 |
TTTGA | 1350 |
>AT5G08710.1 longest ORF length:434
MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF | 50 |
AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET | 100 |
RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT | 150 |
VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS | 200 |
VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK | 250 |
VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY | 300 |
AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL | 350 |
ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD | 400 |
VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF | 450 |