fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G09330 VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4)

>AT5G09330.4 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 657
SacI GAGCT|C 491, 503
SpeI A|CTAGT 562
StyI C|C[AT][AT]GG 946


Click here to view TAIR data

>AT5G09330.4 length:1470
ATGGGGAAAA CTCAACTCGC TCCTGGATTT CGTTTCCATC CGACTGATGT 
50
TGAACTCGTG AGGTATTACT TGAAGAGGAA AATACTGGGG AAAAAGCTCC 
100
TTGTCGATGC TATTGCTGAA GTTGACATTT ACAAGTTTGA ACCCCCTGAT 
150
TTACCTGATA TGTCTTTTAT AAGAAGTGGG GATCTTAAGT GGCACTTCTT 
200
CTGCCCCAGG GAAAAGAAGT ATGCTAGTGG GGTAAGGGCA AACCGTGCAA 
250
CTGAGTGTGG CTACTGGAAG ACCACGGGGA AGGAGAGACC AGTTCTGTGC 
300
AATTCTGAGG TTGTGGGAAA GATCAAAACT CTGGTTTATC ACTTTGGCAA 
350
GTCGCCTCGT GGGGAGCGGA CTGATTGGGT TATGCATGAA TACAGGCTTG 
400
ACGACAAAGT ACTGACGCAG ATGAATGTTC CTCAGGATAC TTATGTGGTG 
450
TGTGTTCTGT TCAAGAAAGA TGGTCCTGGA CCTAGAAATG GAGCTCAATA 
500
TGGAGCTCCG TTTAAGGAAG AGGACTGGAG TGATGAGGAA GTACGTACTG 
550
ATGTTCCTTC TACTAGTAAT CCCACAAACC TTCTTGAGCC TAGCAAAGAA 
600
ACCACTCTGG CTTTGACTGC CCCAGATGAC TCCAATAAGG ATTGTTTTGG 
650
TGGCATGATA TCAGAGTCAT GTGTCTCGGA TTTCCTACCA GCTACAACTA 
700
ATACCACCAG CGAGCTTCCA CATCCAAGTG ATGCAGCTAC CACTCCTATG 
750
TCTACTGCAC CTCTGGCAGA GACCGTTCAG ACCCCCAACA ATGATGACTT 
800
ATATTCAATG TTGGATCTAT TTGATGATGA CGAAGAGTTC TTAGGGTTCA 
850
ACAATAATGA GGTAAGATAT GATCCCGGTG TCTCAGCTCC AGTTTGCTTA 
900
GAAGAAGAAG GCATTTTCAA CGGACTACCA GAGTTGAGCA GCATGCCAAG 
950
GACGGCCTCT TACGACCTAG TTGAAAACTC GGAGTTATAC CTAGAGCTAC 
1000
AAGACCTCAC TGCTCCATTA AATCCCCAAA CTGGGCTACA AGACCTCACT 
1050
GCTCCATTTA ATCCTCAAAC TGGGCTACAA GACCTCACTG CTCCATTTAA 
1100
TCATCAAACT GGGCTACAAG ACCACACTGC TCCATTTAAT CCTCAAACTG 
1150
GGCTACAAGA CCACACTGCT CCATTTAATC ATCAAACTGG GCTACAAGAC 
1200
CTCACTGCTC CATTTAATCC TCAAACTGGG CTACAAGACC TCACTGCTCC 
1250
ATTTAATCCT CAAACTGGGC TACATGACCT CACTTCTCCA TTTAATCCTC 
1300
AAACTGGGCT ACAAGACCTC ACTGCTCCAT TAAATCCTCA AACTGGGAAT 
1350
CGCAATGACC CGAGAAGCTC CTCCTTTCTG TATAATCAAG GCCATTTTGA 
1400
CTTCTCTGGT GGTAATGATG ATGATCCTTA TGGCTTTTCT GCTTCCATGA 
1450
GACATAGACC AAAAATGTAA 
1500

>AT5G09330.4 longest ORF length:489
MGKTQLAPGF RFHPTDVELV RYYLKRKILG KKLLVDAIAE VDIYKFEPPD 
50
LPDMSFIRSG DLKWHFFCPR EKKYASGVRA NRATECGYWK TTGKERPVLC 
100
NSEVVGKIKT LVYHFGKSPR GERTDWVMHE YRLDDKVLTQ MNVPQDTYVV 
150
CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE VRTDVPSTSN PTNLLEPSKE 
200
TTLALTAPDD SNKDCFGGMI SESCVSDFLP ATTNTTSELP HPSDAATTPM 
250
STAPLAETVQ TPNNDDLYSM LDLFDDDEEF LGFNNNEVRY DPGVSAPVCL 
300
EEEGIFNGLP ELSSMPRTAS YDLVENSELY LELQDLTAPL NPQTGLQDLT 
350
APFNPQTGLQ DLTAPFNHQT GLQDHTAPFN PQTGLQDHTA PFNHQTGLQD 
400
LTAPFNPQTG LQDLTAPFNP QTGLHDLTSP FNPQTGLQDL TAPLNPQTGN 
450
RNDPRSSSFL YNQGHFDFSG GNDDDPYGFS ASMRHRPKM
500