fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G09780 REM23 Transcriptional factor B3 family protein (.1)

>AT5G09780.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
HindIII A|AGCTT 51
PvuII CAG|CTG 479
SacI GAGCT|C 142
StyI C|C[AT][AT]GG 266
XhoI C|TCGAG 453, 895


Click here to view TAIR data

>AT5G09780.1 length:927
ATGGCAAGTA ACCCTGATTT TCTTTGGTGC AAAGAAGAGA GGAAGCAGGA 
50
AAGCTTCTTC AAAGTTCTTA AGCGTTCCGA CATGTCTTCA GAGGACACGC 
100
GAGCGATTCC GTACGACTTT GTGATAAACT TCTCTGACAA TGAGCTCTCC 
150
GGAGACATGA AGTTCAGAGT GCAATGGGGA AACTCTTGGA AAGTAAAAAT 
200
CTCCAAGAAC CCGAGATTCT ACTTCATGGA GAAGTCTGGA TGGGAGAAGT 
250
TCGTGATAGA CAATGCCTTG GGAGACCACG AGTTTCTTAC CTTCACTCAC 
300
AAAGGACAGA TGAGCTTCAC TGTGAAAATC TTCAACAAAG ATGGCAAGGA 
350
GATGATGCAA CCTCCGCAAT CCAGAGCCTC TTTCGCTTCT TCTAGTCGTG 
400
TCAAAACAGA ACAAGATGTC AAGAGGGAGG AAGAGGTGTT GGTGTCTTCT 
450
GACTCGAGGT CTCGTGGCCC GACAACAGCA GCTGAAACTA ATAGAGGAGG 
500
CAGCTACAAA AGGAAGCTCA ACTTTGGGAA GAAGAAAGCT GAGGAAACCC 
550
AAACTTACAA GAGGACTGAG AGGACCCAAA ATTCCAAGAG GACGGAGAGA 
600
GTGGTTAGTA AGGAGAGAGT TTATGCAGGC GAACCTTCCT CTTCTGTTGC 
650
AGGATTCAAA ATCTTTATCT CGAAATCATA CATCAAATCC CTGGCGATCC 
700
CGAAACCTTT TGGAAATTAT ATGCCGAAGG AGAAAACAAG GGTCAAGATC 
750
CATCATCCAG ATGGGGAGAA GACATGGAAG GTTGTTTTTG TGGTAAAAGA 
800
GAGGGGTCAA ATTTTCTCTG GTGGATGGAA ACGTTTGTGC AAGGAGTATC 
850
CTGTTGTTTT TGGGGACACT TGCAAATTCA CCCTCATCAC ACCACTCGAG 
900
CTGCTTCTAG TTGTCTCAAA GCCATAA
950

>AT5G09780.1 longest ORF length:308
MASNPDFLWC KEERKQESFF KVLKRSDMSS EDTRAIPYDF VINFSDNELS 
50
GDMKFRVQWG NSWKVKISKN PRFYFMEKSG WEKFVIDNAL GDHEFLTFTH 
100
KGQMSFTVKI FNKDGKEMMQ PPQSRASFAS SSRVKTEQDV KREEEVLVSS 
150
DSRSRGPTTA AETNRGGSYK RKLNFGKKKA EETQTYKRTE RTQNSKRTER 
200
VVSKERVYAG EPSSSVAGFK IFISKSYIKS LAIPKPFGNY MPKEKTRVKI 
250
HHPDGEKTWK VVFVVKERGQ IFSGGWKRLC KEYPVVFGDT CKFTLITPLE 
300
LLLVVSKP
350