fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G10970 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G10970.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NotI, PacI, PstI, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 175
NcoI C|CATGG 468
NdeI CA|TATG 443
NheI G|CTAGC 189
PvuII CAG|CTG 770
SpeI A|CTAGT 585
StyI C|C[AT][AT]GG 468, 491


Click here to view TAIR data

>AT5G10970.1 length:819
ATGGATTCTT CCAGCGGAAA ACCAAGATCA TCTGATTCCT CATGCATCAT 
50
TTCTGCATCC ACCAGTCTTC AATTTTCAGA TTCCCCAAAG CTGAGCCTAG 
100
AAAATTACAA CATAGACACA GTAGCAGCAC AAGAAGAAGA TGATCATGAC 
150
CAAAAAGAAG GAGTGGAAGG TATAAAGCTT GACCTTATGC TAGCAGGATA 
200
TGATTCTAGT CAACCACAGC TCAATCAAGA ACTCAATCTC CTCGACTGCT 
250
TAGAGACAGG TGTAGTCACT CCGAGTTTTA ACGGGTCAAC TTCCACTGAA 
300
CAGAAGCTCT TCTCATGCAA CTACTGTCAA AGAACATTCT ACAGCTCACA 
350
GGCGCTTGGT GGTCACCAAA ACGCCCACAA AAGAGAAAGG ACTTTGGCAA 
400
AGCGAGGGCA ACGGATGGCA TCTGCCGCAG CTTTCGGGCA TCCATATGGT 
450
TTTGCTCCGG TCCCGTTCCA TGGACAGTAC AGCAACAGAA CCTTGGGTAT 
500
TCAGGCACAC TCAATGAGTC ATAAGCCAAG TTCATATAAC GTTTACGGTG 
550
GTGAGTATGG TCAGATCAAC TGGTCAAGGA TACCACTAGT TCAGCAACCA 
600
GCAATAGCAA AACTAACTTC AACAGAGAAT CATTATAATC ATCATCAGAT 
650
GATGATTGCT CCACCGTTGA CTTCCACATG TGAAAACATC GGTAGGTTCG 
700
ATGTAGGAAG GATTCCAGTA GAGTTTCCAA CTTCTGAACT ATGGCAGAGA 
750
GGCGAGGAAT TGTTGAAGCC AGCTGAAGAA GAGAAGCAGA AGAACCTTGA 
800
CTTGTCCCTT AAACTTTGA
850

>AT5G10970.1 longest ORF length:272
MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD 
50
QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE 
100
QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG 
150
FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP 
200
AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR 
250
GEELLKPAEE EKQKNLDLSL KL
300