Locus |
Common name |
Short description |
AT5G10970 |
|
C2H2 and C2HC zinc fingers superfamily protein (.1) |
>AT5G10970.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NotI, PacI, PstI, SacI, SalI, SmaI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
HindIII
| A|AGCTT |
175 |
NcoI
| C|CATGG |
468 |
NdeI
| CA|TATG |
443 |
NheI
| G|CTAGC |
189 |
PvuII
| CAG|CTG |
770 |
SpeI
| A|CTAGT |
585 |
StyI
| C|C[AT][AT]GG |
468, 491 |
Click here to view TAIR data
>AT5G10970.1 length:819
ATGGATTCTT CCAGCGGAAA ACCAAGATCA TCTGATTCCT CATGCATCAT | 50 |
TTCTGCATCC ACCAGTCTTC AATTTTCAGA TTCCCCAAAG CTGAGCCTAG | 100 |
AAAATTACAA CATAGACACA GTAGCAGCAC AAGAAGAAGA TGATCATGAC | 150 |
CAAAAAGAAG GAGTGGAAGG TATAAAGCTT GACCTTATGC TAGCAGGATA | 200 |
TGATTCTAGT CAACCACAGC TCAATCAAGA ACTCAATCTC CTCGACTGCT | 250 |
TAGAGACAGG TGTAGTCACT CCGAGTTTTA ACGGGTCAAC TTCCACTGAA | 300 |
CAGAAGCTCT TCTCATGCAA CTACTGTCAA AGAACATTCT ACAGCTCACA | 350 |
GGCGCTTGGT GGTCACCAAA ACGCCCACAA AAGAGAAAGG ACTTTGGCAA | 400 |
AGCGAGGGCA ACGGATGGCA TCTGCCGCAG CTTTCGGGCA TCCATATGGT | 450 |
TTTGCTCCGG TCCCGTTCCA TGGACAGTAC AGCAACAGAA CCTTGGGTAT | 500 |
TCAGGCACAC TCAATGAGTC ATAAGCCAAG TTCATATAAC GTTTACGGTG | 550 |
GTGAGTATGG TCAGATCAAC TGGTCAAGGA TACCACTAGT TCAGCAACCA | 600 |
GCAATAGCAA AACTAACTTC AACAGAGAAT CATTATAATC ATCATCAGAT | 650 |
GATGATTGCT CCACCGTTGA CTTCCACATG TGAAAACATC GGTAGGTTCG | 700 |
ATGTAGGAAG GATTCCAGTA GAGTTTCCAA CTTCTGAACT ATGGCAGAGA | 750 |
GGCGAGGAAT TGTTGAAGCC AGCTGAAGAA GAGAAGCAGA AGAACCTTGA | 800 |
CTTGTCCCTT AAACTTTGA | 850 |
>AT5G10970.1 longest ORF length:272
MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD | 50 |
QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE | 100 |
QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG | 150 |
FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP | 200 |
AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR | 250 |
GEELLKPAEE EKQKNLDLSL KL | 300 |
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