fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G11190 SHN2, SHN3 shine2, Integrase-type DNA-binding superfamily protein (.1)

>AT5G11190.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
HpaI GTT|AAC 229


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>AT5G11190.1 length:570
ATGGTACATT CGAGGAAGTT CCGAGGTGTC CGCCAGCGAC AATGGGGTTC 
50
TTGGGTCTCT GAGATTCGCC ATCCTCTATT GAAGAGAAGA GTGTGGCTTG 
100
GAACTTTCGA AACGGCAGAA GCGGCTGCAA GAGCATACGA CCAAGCGGCT 
150
CTTCTAATGA ACGGCCAAAA CGCTAAGACC AATTTCCCTG TCGTAAAATC 
200
AGAGGAAGGC TCCGATCACG TTAAAGATGT TAACTCTCCG TTGATGTCAC 
250
CAAAGTCATT ATCTGAGCTT TTGAACGCTA AGCTAAGGAA GAGCTGCAAA 
300
GACCTAACGC CTTCTTTGAC GTGTCTCCGT CTTGATACTG ACAGTTCCCA 
350
CATTGGAGTT TGGCAGAAAC GGGCCGGGTC GAAAACAAGT CCGACTTGGG 
400
TCATGCGCCT CGAACTTGGG AACGTAGTCA ACGAAAGTGC GGTTGACTTA 
450
GGGTTGACTA CGATGAACAA ACAAAACGTT GAGAAAGAAG AAGAAGAAGA 
500
AGAAGCTATT ATTAGTGATG AGGATCAGTT AGCTATGGAG ATGATCGAGG 
550
AGTTGCTGAA TTGGAGTTGA 
600

>AT5G11190.1 longest ORF length:189
MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA 
50
LLMNGQNAKT NFPVVKSEEG SDHVKDVNSP LMSPKSLSEL LNAKLRKSCK 
100
DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PTWVMRLELG NVVNESAVDL 
150
GLTTMNKQNV EKEEEEEEAI ISDEDQLAME MIEELLNWS
200