Locus |
Common name |
Short description |
AT5G11590 |
DREB3, TINY2 |
TINY2, Integrase-type DNA-binding superfamily protein (.1) |
>AT5G11590.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XbaI
Name |
Recognition sequence |
Cut positions |
NcoI
| C|CATGG |
687 |
SacI
| GAGCT|C |
514 |
SalI
| G|TCGAC |
562 |
StyI
| C|C[AT][AT]GG |
576, 687 |
XhoI
| C|TCGAG |
362, 466, 495 |
Click here to view TAIR data
>AT5G11590.1 length:711
ATGGCAGAGG AATACTACAG CCTCCGCTCG GAGAGAGTAA CTCAGCTTCT | 50 |
TGTCCCTAAC TCGGAGTCTG ACTCAGTGAG TGACAAAAGC AAAGCTGAGC | 100 |
AAAGCGAGAA GAAGACTAAA CGTGGGAGAG ACTCCGGTAA ACACCCTGTT | 150 |
TATCGCGGAG TAAGGATGAG GAACTGGGGA AAATGGGTGT CGGAGATTCG | 200 |
TGAGCCGAGG AAGAAATCAC GTATTTGGCT GGGAACTTTC CCGACGCCGG | 250 |
AGATGGCGGC GCGTGCACAC GACGTGGCGG CTCTGAGCAT TAAAGGAACG | 300 |
GCCGCTATAC TAAACTTCCC TGAACTCGCT GACTCATTCC CTCGACCCGT | 350 |
TTCATTAAGC CCTCGAGACA TTCAGACAGC AGCTCTTAAA GCAGCTCACA | 400 |
TGGAACCGAC GACGTCGTTT TCATCTTCCA CGTCTTCGTC GTCGTCTTTG | 450 |
TCTTCTACGT CTTCGCTCGA GTCTCTTGTG TTGGTGATGG ACCTCTCGAG | 500 |
GACTGAGTCG GAGGAGCTCG GTGAGATTGT GGAGCTTCCA AGTCTCGGGG | 550 |
CGAGTTACGA CGTCGACTCG GCTAACCTTG GGAACGAGTT TGTCTTCTAT | 600 |
GACTCAGTTG ACTACTGTTT ATATCCGCCG CCGTGGGGAC AGTCGTCCGA | 650 |
AGATAACTAT GGTCACGGAA TTAGCCCTAA TTTTGGCCAT GGCTTGTCAT | 700 |
GGGATCTCTA A | 750 |
>AT5G11590.1 longest ORF length:236
MAEEYYSLRS ERVTQLLVPN SESDSVSDKS KAEQSEKKTK RGRDSGKHPV | 50 |
YRGVRMRNWG KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGT | 100 |
AAILNFPELA DSFPRPVSLS PRDIQTAALK AAHMEPTTSF SSSTSSSSSL | 150 |
SSTSSLESLV LVMDLSRTES EELGEIVELP SLGASYDVDS ANLGNEFVFY | 200 |
DSVDYCLYPP PWGQSSEDNY GHGISPNFGH GLSWDL | 250 |
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