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| Locus | Common name | Short description |
| AT5G12440 | CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) |
>AT5G12440.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XhoI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 570, 1163 |
| EcoRV | GAT|ATC | 758 |
| HindIII | A|AGCTT | 45 |
| HpaI | GTT|AAC | 1717 |
| PvuII | CAG|CTG | 1091 |
| SalI | G|TCGAC | 153 |
| StyI | C|C[AT][AT]GG | 340, 802, 1416, 1676 |
| XbaI | T|CTAGA | 1066 |
Click here to view TAIR data
>AT5G12440.1 length:1953
ATGGATTCCG GTGACGCGAC ATCTTTGCTT TTGACGAAAA TTCGAAGCTT | 50 |
GGAGCCAGAT TATGCTCCTA AGATTATTGG GTATTTGCTT TTACATGATT | 100 |
TTGGTGATAG AGACTTGATG CATCTGGCTC GTGGACCTGA ATCGATTTTG | 150 |
CAGTCGACTA TTTCGAAAGT GAAGAGTCTC TTGGGGATTT TCTCCAACAA | 200 |
CTCGCCTTCT TCTACTCCGA CGTCTCCTTC TCCGTTGAAT CCTATCTGTC | 250 |
GTCCTCCTCT TAACGGAAGA GGAAGCTCTC ACTCCAATGG GTTTATGGAT | 300 |
TTCCGTAGAA ACTCTCCGTC TTCTCCTTCT TCTACCTCTC CTTGGTCATT | 350 |
CAACAACTGT ATCAACGGTA ATAATGGGAA TAACCCCCAC ATTTCCCCTA | 400 |
AACACACTCC GATCTCGAAA CCCTTTAGCT CTCACCAAAG CAATGGACTT | 450 |
TCTGCTACAC ATTCTGGTAG TGCTGACGCT GCTGGTGGTG CTGATTTACT | 500 |
TGATGATCAG CAGCTTAATG ATTGCCTTTC GTTTCTCGAC GATTCTTGTT | 550 |
CTAAAACCGA GGATCTTGTG GATCCTAGCA TTCCTTTGGA TTACTCTGTA | 600 |
GATGGTGATG GTGAAACCCA TCTGCACAGG AGGAGTTTCT CTTGTGATGC | 650 |
GTCTTTTGTG TCCGGAGATG ATGGATTTGG TGGTGGATGC AAACCATGTG | 700 |
TGTATTTTAG TAGAGGTTTG TGCAAGAATG GAGAAAGCTG CAAGTTTATC | 750 |
CACGGTGGAT ATCCGGATAA TATGGATGGT AATGGCATTG TCGCTGACTC | 800 |
GCCTAGGAAA ATGGAGAACT TTGTTAGGCA GCACGAGGAG ATGATGAGGC | 850 |
TGAAATTGGC TTACCAGCAG CAGAGGTTGG CTTCTCAAAT CCTGGGTCGG | 900 |
GCTCCCCAGT TGCCATACGA GAAAAGAATG GACTTTCTCT TGCAGCAGCA | 950 |
TGCTCAAAGA GATGGTGGAC TGCCTTTTGG TGATGAAAGA TTTTGGAGCA | 1000 |
GCAGCCCAGG ACGGCTTGAG AGGATGGAGC TGGCAATGCA TTTAGGTGAT | 1050 |
CAGTCAAATT CGGCATCTAG ACAGATTTAC TTGACATTCC CAGCTGACAG | 1100 |
CACGTTTAAG GATGAGGATG TTGCTACATA TTTCAGCCTC TTTGGAACAG | 1150 |
TCCAAGATGT GCGGATCCCA TACCAACAGA AGCGTATGTT TGGCTTTGTT | 1200 |
TCATTTGCTC ATCCCGAGAC AGTGAAAGTT GTACTAGCTA GAGGGAATCC | 1250 |
CCATTTCATT TGCGACTCAC GGGTTCTTGT CAAACCTTAC AAAGAAAAAG | 1300 |
GCAAAGTCTT GGACAAGAAG CAACAGCAAC TGCTACAACA GCAGATTGAG | 1350 |
CGAGGAAATT ACTCCCCGTG CTCCAGTCCA TCTGGGATTG ATCCTAGAGA | 1400 |
ACAGTCTGAT TTCCACCTTG GTTCAAAGAT GTTGTATGAG AGACGTGAGA | 1450 |
TGATGAGAAG GAAAATAGAG CAGGCTGATC TCCTGAGGGC TATTGAACTC | 1500 |
GAAAGAAGAC GTTTCATTAA TTTACAGCTT CCTGAGTTCA AGAATAGTGT | 1550 |
AACGCTGAAT CATCACCGTA GCTTTTCTGT GGGGTCTCCT GGTTATTTTT | 1600 |
CATCTGCCGG CAATCAAAGC CCTGATTTTC AATCTGAACT TAACGGTGCA | 1650 |
GATGCTTTAA AAGTAACTGA TGATACCTTG GAGCTGCATC CTTACCCAGT | 1700 |
AGTCAACCCA ATGAGTGTTA ACAATAGCTA CTCAAACGGT GCAAAAGAAG | 1750 |
AGACTAACAA GAGTGAATTG CTTGATCCCG ATTCTGGAAG CACCATTGAG | 1800 |
CTTGTTCTTC CTAGTAACCT CTTCCCTTCT GCATCATCTA CCGATGATCA | 1850 |
CAAAACCGAT GATTCTGCTG AAACTAATGC AAAAGTTGGA GTCTCCTCTA | 1900 |
CTAATGAAAA TGACCATGAA CCACCAGTCA CTACCAATAA TCTGATGCAG | 1950 |
TAG | 2000 |
>AT5G12440.1 longest ORF length:650
MDSGDATSLL LTKIRSLEPD YAPKIIGYLL LHDFGDRDLM HLARGPESIL | 50 |
QSTISKVKSL LGIFSNNSPS STPTSPSPLN PICRPPLNGR GSSHSNGFMD | 100 |
FRRNSPSSPS STSPWSFNNC INGNNGNNPH ISPKHTPISK PFSSHQSNGL | 150 |
SATHSGSADA AGGADLLDDQ QLNDCLSFLD DSCSKTEDLV DPSIPLDYSV | 200 |
DGDGETHLHR RSFSCDASFV SGDDGFGGGC KPCVYFSRGL CKNGESCKFI | 250 |
HGGYPDNMDG NGIVADSPRK MENFVRQHEE MMRLKLAYQQ QRLASQILGR | 300 |
APQLPYEKRM DFLLQQHAQR DGGLPFGDER FWSSSPGRLE RMELAMHLGD | 350 |
QSNSASRQIY LTFPADSTFK DEDVATYFSL FGTVQDVRIP YQQKRMFGFV | 400 |
SFAHPETVKV VLARGNPHFI CDSRVLVKPY KEKGKVLDKK QQQLLQQQIE | 450 |
RGNYSPCSSP SGIDPREQSD FHLGSKMLYE RREMMRRKIE QADLLRAIEL | 500 |
ERRRFINLQL PEFKNSVTLN HHRSFSVGSP GYFSSAGNQS PDFQSELNGA | 550 |
DALKVTDDTL ELHPYPVVNP MSVNNSYSNG AKEETNKSEL LDPDSGSTIE | 600 |
LVLPSNLFPS ASSTDDHKTD DSAETNAKVG VSSTNENDHE PPVTTNNLMQ | 650 |