fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G12870 ATMYB46 myb domain protein 46 (.1)

>AT5G12870.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 730
HindIII A|AGCTT 480
NdeI CA|TATG 837


Click here to view TAIR data

>AT5G12870.1 length:843
ATGAGGAAGC CAGAGGTAGC CATTGCAGCT AGTACTCACC AAGTAAAGAA 
50
GATGAAGAAG GGACTTTGGT CTCCTGAGGA AGACTCAAAG CTGATGCAAT 
100
ACATGTTAAG CAATGGACAA GGATGTTGGA GTGATGTTGC GAAAAACGCA 
150
GGACTTCAAA GATGTGGCAA AAGCTGCCGT CTTCGTTGGA TCAACTATCT 
200
TCGTCCTGAC CTCAAGCGTG GCGCTTTCTC TCCTCAAGAA GAGGATCTCA 
250
TCATTCGCTT TCATTCCATC CTCGGCAACA GGTGGTCTCA GATTGCAGCA 
300
CGATTGCCTG GTCGGACCGA TAACGAGATC AAGAATTTCT GGAACTCAAC 
350
AATAAAGAAA AGGCTAAAGA AGATGTCCGA TACCTCCAAC TTAATCAACA 
400
ACTCATCCTC ATCACCCAAC ACAGCAAGCG ATTCCTCTTC TAATTCCGCA 
450
TCTTCTTTGG ATATTAAAGA CATTATAGGA AGCTTCATGT CCTTACAAGA 
500
ACAAGGCTTC GTCAACCCTT CCTTGACCCA CATACAAACC AACAATCCAT 
550
TTCCAACGGG AAACATGATC AGCCACCCGT GCAATGACGA TTTTACCCCT 
600
TATGTAGATG GTATCTATGG AGTAAACGCA GGGGTACAAG GGGAACTCTA 
650
CTTCCCACCT TTGGAATGTG AAGAAGGTGA TTGGTACAAT GCAAATATAA 
700
ACAACCACTT AGACGAGTTG AACACTAATG GATCCGGAAA CGCACCTGAG 
750
GGTATGAGAC CAGTGGAAGA ATTTTGGGAC CTTGACCAGT TGATGAACAC 
800
TGAGGTTCCT TCGTTTTACT TCAACTTCAA ACAAAGCATA TGA
850

>AT5G12870.1 longest ORF length:280
MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA 
50
GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA 
100
RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA 
150
SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP 
200
YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE 
250
GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI 
300