fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G13180 VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1)

>AT5G13180.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 707
SacI GAGCT|C 663
StyI C|C[AT][AT]GG 166
XbaI T|CTAGA 310


Click here to view TAIR data

>AT5G13180.1 length:759
ATGGATAATG TCAAACTTGT TAAGAATGGT GTTTTGAGAT TGCCACCTGG 
50
ATTCAGATTC CATCCTACTG ATGAAGAACT TGTGGTTCAA TACCTTAAGA 
100
GGAAAGTTTG TTCTTCTCCT TTGCCAGCTT CAATCATCCC TGAGTTTGAT 
150
GTTTGCAGAG CTGATCCTTG GGATTTACCT GGCAATTTGG AGAAAGAGAG 
200
GTACTTCTTT AGCACAAGGG AAGCTAAATA CCCAAATGGG AACCGGTCTA 
250
ACCGGGCAAC TGGGTCTGGT TATTGGAAAG CTACCGGTAT TGATAAACGG 
300
GTTGTGACCT CTAGAGGAAA TCAAATCGTT GGTTTGAAGA AAACTCTTGT 
350
CTTCTACAAA GGCAAACCAC CTCATGGCTC AAGAACCGAT TGGATCATGC 
400
ACGAATATCG CCTCTCTTCT TCTCCTCCGA GTTCTATGGG TCCCACTCAG 
450
AACTGGGTAC TCTGTCGTAT CTTCTTGAAG AAAAGAGCCG GTAACAAGAA 
500
CGACGACGAC GACGGAGATA GCCGTAATCT TAGACATAAT AATAATAACA 
550
ATTCGAGTGA CCAAATTGAG ATAATTACAA CAGACCAAAC AGATGATAAA 
600
ACAAAACCAA TCTTCTTTGA TTTCATGAGA AAAGAAAGAA CAACAGATTT 
650
GAACCTTTTG CCGAGCTCTC CTTCTTCCGA TCATGCTTCA AGTGGAGTCA 
700
CGACGGAGAT CTTCTCTTCT TCCGATGAAG AGACCAGTAG TTGCAATAGT 
750
TTCAGATGA
800

>AT5G13180.1 longest ORF length:252
MDNVKLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVCSSP LPASIIPEFD 
50
VCRADPWDLP GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR 
100
VVTSRGNQIV GLKKTLVFYK GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ 
150
NWVLCRIFLK KRAGNKNDDD DGDSRNLRHN NNNNSSDQIE IITTDQTDDK 
200
TKPIFFDFMR KERTTDLNLL PSSPSSDHAS SGVTTEIFSS SDEETSSCNS 
250
FR
300