Locus |
Common name |
Short description |
AT5G13220 |
JAS1, TIFY9, JAZ10, AT5G13220 |
TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) |
>AT5G13220.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI
Name |
Recognition sequence |
Cut positions |
BglII
| A|GATCT |
432, 495 |
XbaI
| T|CTAGA |
486 |
XhoI
| C|TCGAG |
535 |
Click here to view TAIR data
>AT5G13220.1 length:594
ATGTCGAAAG CTACCATAGA ACTCGATTTC CTCGGACTTG AGAAGAAACA | 50 |
AACCAACAAC GCTCCTAAGC CTAAGTTCCA GAAATTTCTC GATCGCCGTC | 100 |
GTAGTTTCCG AGATATTCAA GGTGCGATTT CGAAAATCGA TCCGGAGATT | 150 |
ATCAAATCGC TGTTAGCTTC CACTGGAAAC AATTCCGATT CATCGGCTAA | 200 |
ATCTCGTTCG GTTCCGTCTA CTCCGAGGGA AGATCAGCCT CAGATCCCGA | 250 |
TTTCTCCGGT CCACGCGTCT CTCGCCAGGT CTAGTACCGA ACTCGTTTCG | 300 |
GGAACTGTTC CTATGACGAT TTTCTACAAT GGAAGTGTTT CAGTTTTCCA | 350 |
AGTGTCTCGT AACAAAGCTG GTGAAATTAT GAAGGTCGCT AATGAAGCAG | 400 |
CATCTAAGAA AGACGAGTCG TCGATGGAGA CAGATCTTTC GGTAATTCTT | 450 |
CCGACCACTC TAAGACCAAA GCTCTTTGGC CAGAATCTAG AAGGAGATCT | 500 |
TCCCATCGCA AGGAGAAAGT CACTGCAACG TTTTCTCGAG AAGCGCAAGG | 550 |
AGAGATTAGT ATCAACATCT CCTTACTATC CGACATCGGC CTAA | 600 |
>AT5G13220.1 longest ORF length:197
MSKATIELDF LGLEKKQTNN APKPKFQKFL DRRRSFRDIQ GAISKIDPEI | 50 |
IKSLLASTGN NSDSSAKSRS VPSTPREDQP QIPISPVHAS LARSSTELVS | 100 |
GTVPMTIFYN GSVSVFQVSR NKAGEIMKVA NEAASKKDES SMETDLSVIL | 150 |
PTTLRPKLFG QNLEGDLPIA RRKSLQRFLE KRKERLVSTS PYYPTSA | 200 |
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