fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G13220 JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)

>AT5G13220.3 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI
Name Recognition sequence Cut positions
BglII A|GATCT 432, 495
XbaI T|CTAGA 486
XhoI C|TCGAG 535


Click here to view TAIR data

>AT5G13220.3 length:558
ATGTCGAAAG CTACCATAGA ACTCGATTTC CTCGGACTTG AGAAGAAACA 
50
AACCAACAAC GCTCCTAAGC CTAAGTTCCA GAAATTTCTC GATCGCCGTC 
100
GTAGTTTCCG AGATATTCAA GGTGCGATTT CGAAAATCGA TCCGGAGATT 
150
ATCAAATCGC TGTTAGCTTC CACTGGAAAC AATTCCGATT CATCGGCTAA 
200
ATCTCGTTCG GTTCCGTCTA CTCCGAGGGA AGATCAGCCT CAGATCCCGA 
250
TTTCTCCGGT CCACGCGTCT CTCGCCAGGT CTAGTACCGA ACTCGTTTCG 
300
GGAACTGTTC CTATGACGAT TTTCTACAAT GGAAGTGTTT CAGTTTTCCA 
350
AGTGTCTCGT AACAAAGCTG GTGAAATTAT GAAGGTCGCT AATGAAGCAG 
400
CATCTAAGAA AGACGAGTCG TCGATGGAGA CAGATCTTTC GGTAATTCTT 
450
CCGACCACTC TAAGACCAAA GCTCTTTGGC CAGAATCTAG AAGGAGATCT 
500
TCCCATCGCA AGGAGAAAGT CACTGCAACG TTTTCTCGAG AAGCGCAAGG 
550
AGAGGTAA
600

>AT5G13220.3 longest ORF length:185
MSKATIELDF LGLEKKQTNN APKPKFQKFL DRRRSFRDIQ GAISKIDPEI 
50
IKSLLASTGN NSDSSAKSRS VPSTPREDQP QIPISPVHAS LARSSTELVS 
100
GTVPMTIFYN GSVSVFQVSR NKAGEIMKVA NEAASKKDES SMETDLSVIL 
150
PTTLRPKLFG QNLEGDLPIA RRKSLQRFLE KRKER
200