fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G13330 RAP2.6L related to AP2 6l (.1)

>AT5G13330.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 136
SalI G|TCGAC 486
StyI C|C[AT][AT]GG 136, 263, 294


Click here to view TAIR data

>AT5G13330.1 length:639
ATGGTCTCCG CTCTCAGCCG TGTCATAGAG AATCCGACAG ACCCGCCGGT 
50
CAAACAAGAG CTTGATAAAT CGGATCAACA TCAACCAGAC CAAGATCAAC 
100
CAAGAAGAAG ACACTATAGA GGCGTAAGGC AGAGACCATG GGGTAAATGG 
150
GCGGCAGAAA TCCGCGATCC AAAGAAAGCA GCCCGTGTCT GGCTCGGGAC 
200
TTTCGAGACG GCAGAGGAAG CTGCTTTAGC CTATGACCGA GCTGCCCTCA 
250
AATTCAAAGG CACCAAGGCT AAACTGAACT TCCCTGAACG GGTCCAAGGC 
300
CCTACTACCA CCACAACCAT TTCTCATGCA CCAAGAGGAG TTAGTGAATC 
350
CATGAACTCA CCTCCTCCTC GACCTGGTCC ACCTTCAACT ACTACTACTT 
400
CGTGGCCAAT GACTTATAAC CAGGACATAC TTCAATACGC TCAGTTGCTT 
450
ACGAGTAACA ATGAGGTTGA TTTATCATAC TACACGTCGA CTCTCTTCAG 
500
TCAACCTTTT TCAACGCCTT CTTCATCTTC TTCTTCCTCC CAACAGACGC 
550
AGCAACAGCA GCTACAACAA CAACAACAGC AGCGTGAAGA AGAAGAGAAG 
600
AATTATGGTT ACAATTATTA TAACTACCCA AGAGAATAA
650

>AT5G13330.1 longest ORF length:212
MVSALSRVIE NPTDPPVKQE LDKSDQHQPD QDQPRRRHYR GVRQRPWGKW 
50
AAEIRDPKKA ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG 
100
PTTTTTISHA PRGVSESMNS PPPRPGPPST TTTSWPMTYN QDILQYAQLL 
150
TSNNEVDLSY YTSTLFSQPF STPSSSSSSS QQTQQQQLQQ QQQQREEEEK 
200
NYGYNYYNYP RE
250