Locus |
Common name |
Short description |
AT5G13330 |
RAP2.6L |
related to AP2 6l (.1) |
>AT5G13330.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
NcoI
| C|CATGG |
136 |
SalI
| G|TCGAC |
486 |
StyI
| C|C[AT][AT]GG |
136, 263, 294 |
Click here to view TAIR data
>AT5G13330.1 length:639
ATGGTCTCCG CTCTCAGCCG TGTCATAGAG AATCCGACAG ACCCGCCGGT | 50 |
CAAACAAGAG CTTGATAAAT CGGATCAACA TCAACCAGAC CAAGATCAAC | 100 |
CAAGAAGAAG ACACTATAGA GGCGTAAGGC AGAGACCATG GGGTAAATGG | 150 |
GCGGCAGAAA TCCGCGATCC AAAGAAAGCA GCCCGTGTCT GGCTCGGGAC | 200 |
TTTCGAGACG GCAGAGGAAG CTGCTTTAGC CTATGACCGA GCTGCCCTCA | 250 |
AATTCAAAGG CACCAAGGCT AAACTGAACT TCCCTGAACG GGTCCAAGGC | 300 |
CCTACTACCA CCACAACCAT TTCTCATGCA CCAAGAGGAG TTAGTGAATC | 350 |
CATGAACTCA CCTCCTCCTC GACCTGGTCC ACCTTCAACT ACTACTACTT | 400 |
CGTGGCCAAT GACTTATAAC CAGGACATAC TTCAATACGC TCAGTTGCTT | 450 |
ACGAGTAACA ATGAGGTTGA TTTATCATAC TACACGTCGA CTCTCTTCAG | 500 |
TCAACCTTTT TCAACGCCTT CTTCATCTTC TTCTTCCTCC CAACAGACGC | 550 |
AGCAACAGCA GCTACAACAA CAACAACAGC AGCGTGAAGA AGAAGAGAAG | 600 |
AATTATGGTT ACAATTATTA TAACTACCCA AGAGAATAA | 650 |
>AT5G13330.1 longest ORF length:212
MVSALSRVIE NPTDPPVKQE LDKSDQHQPD QDQPRRRHYR GVRQRPWGKW | 50 |
AAEIRDPKKA ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG | 100 |
PTTTTTISHA PRGVSESMNS PPPRPGPPST TTTSWPMTYN QDILQYAQLL | 150 |
TSNNEVDLSY YTSTLFSQPF STPSSSSSSS QQTQQQQLQQ QQQQREEEEK | 200 |
NYGYNYYNYP RE | 250 |
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