fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G13910 LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1)

>AT5G13910.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 435, 498
PvuII CAG|CTG 95
StyI C|C[AT][AT]GG 79, 167


Click here to view TAIR data

>AT5G13910.1 length:636
ATGAACACAA CATCATCAAA GAGCAAGAAG AAGCAAGACG ATCAGGTTGG 
50
TACAAGGTTT CTTGGGGTGA GAAGAAGGCC TTGGGGAAGA TACGCAGCTG 
100
AGATTAGAGA CCCAACTACG AAGGAGCGTC ACTGGCTTGG CACTTTCGAT 
150
ACGGCGGAAG AAGCTGCCTT GGCCTACGAT AGAGCTGCTC GGTCCATGCG 
200
TGGCACACGT GCCAGAACCA ACTTTGTTTA CTCAGACATG CCTCCTTCCT 
250
CATCCGTCAC CTCCATTGTT TCTCCTGACG ATCCTCCTCC TCCTCCACCT 
300
CCTCCTGCTC CTCCTAGCAA TGATCCTGTC GATTACATGA TGATGTTTAA 
350
CCAATACTCA TCCACTGACT CGCCAATGCT TCAGCCTCAT TGTGATCAAG 
400
TGGACAGTTA CATGTTTGGT GGCTCTCAAT CTTCGAATTC TTATTGCTAT 
450
TCTAATGACA GTAGTAATGA GCTGCCTCCT CTCCCGAGCG ACTTGTCGAA 
500
TTCGTGTTAT AGCCAACCAC AGTGGACCTG GACCGGTGAC GACTACTCGT 
550
CTGAGTACGT ACATAGTCCA ATGTTCAGCA GAATGCCTCC GGTTTCTGAC 
600
TCTTTCCCTC AAGGTTTCAA CTACTTTGGC TCCTAA
650

>AT5G13910.1 longest ORF length:211
MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD 
50
TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP 
100
PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY 
150
SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD 
200
SFPQGFNYFG S
250