fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G15150 ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)

>AT5G15150.1 CDS map

>>Show genomic map




Uncut enzymes: Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TspRI, Tth111I, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 876
AccII(FnuDII) CG|CG 778, 784
AciI C|CGC 777, 783
AhdI GACNNN|NNGTC 318
AluI AG|CT 386, 393, 405, 429, 490, 510, 670
ApoI Pu|AATTPy 357, 661
AvaI C|PyCGPuG 514
AvrII C|CTAGG 457
BclI T|GATCA 276, 746, 810
BfaI C|TAG 395, 456, 492, 882
BglII A|GATCT 753
BsaBI GATNN|NNATC 230, 833
BsaHI GPu|CGPyC 876
BsaJI C|CNNGG 457
BsiEI CGPuPy|CG 630, 782
BslI CCNNNNN|NNGG 78
BsoBI C|PyCGPuG 514
BssKI |CCNGG 284
BstNI CC|[AT]GG 284
BstUI CG|CG 778, 784
BstYI Pu|GATCPy 753
Cac8I GCN|NGC 432
DdeI C|TNAG 51, 436, 604
DpnI GA-CH3|TC 198, 224, 275, 649, 745, 752, 769, 774, 809, 827, 833
DpnII |GATC 198, 224, 275, 649, 745, 752, 769, 774, 809, 827, 833
EcoRI G|AATTC 661
Fnu4HI GC|NGC 428, 452, 509, 908
HaeIII GG|CC 64, 897
HindIII A|AGCTT 671
HinfI G|ANTC 528, 570, 639
Hpy188I TCN|GA 222, 309, 479, 561, 723, 772, 815
Hpy99I CG[AT]CG| 874
HpyCH4III ACN|GT 542, 631
HpyCH4IV A|CGT 875
HpyCH4V TG|CA 426, 450, 466, 845
MboI |GATC 198, 224, 275, 649, 745, 752, 769, 774, 809, 827, 833
MfeI C|AATTG 939
MwoI GCNNNNN|NNGC 458, 905
NdeI CA|TATG 325
NlaIII CATG| 77, 85, 101, 187, 268, 599, 675, 734, 742, 894
NlaIV GGN|NCC 411
NspI PuCATG|Py 600
PaeR7I C|TCGAG 514
PspGI |CC[AT]GG 284
Sau3AI |GATC 198, 224, 275, 649, 745, 752, 769, 774, 809, 827, 833
ScrFI CC|NGG 284
SexAI A|CC[AT]GGT 285
SmlI C|TPyPuAG 514
StyI C|C[AT][AT]GG 457
Taqƒ¿I T|CGA 390, 513, 546, 767
TfiI G|A[AT]TC 528, 570, 639
TliI C|TCGAG 514
TseI G|C[AT]GC 428, 452, 509, 908
Tsp45I |GT[CG]AC 320
Tsp509I |AATT 356, 660, 938
XhoI C|TCGAG 514
XmnI GAANN|NNTTC 388


Click here to view TAIR data

>AT5G15150.1 length:945
ATGTATATGT ATGAGGAGGA AAGGAACAAT ATCAATAATA ATCAAGAAGG 
50
ACTGAGATTG GAGATGGCCT TTCCTCAACA TGGCTTCATG TTTCAGCAAC 
100
TCCATGAAGA CAATGCTCAT CACTTACCTT CCCCAACCTC TCTCCCCTCT 
150
TGTCCTCCTC ATCTCTTCTA TGGAGGAGGA GGAAACTACA TGATGAACAG 
200
ATCAATGTCG TTCACGGGAG TATCAGATCA TCATCATCTA ACTCAAAAAA 
250
GCCCGACAAC AACGAACAAC ATGAATGATC AAGACCAGGT AGGCGAGGAA 
300
GACAACCTAT CAGACGATGG GTCACATATG ATGTTAGGAG AGAAGAAGAA 
350
GAGGCTGAAT TTAGAGCAAG TTAGGGCATT AGAGAAGAGC TTCGAGCTAG 
400
GGAACAAGCT GGAGCCAGAG AGGAAGATGC AGCTTGCTAA GGCTTTAGGA 
450
TTGCAGCCTA GGCAGATTGC AATATGGTTT CAGAACAGGA GAGCTAGGTG 
500
GAAGACAAAG CAGCTCGAGA GAGACTATGA TTCTCTCAAA AAACAGTTCG 
550
ATGTTTTGAA ATCGGACAAT GATTCTCTTC TTGCCCACAA CAAGAAACTA 
600
CATGCTGAGT TAGTGGCATT GAAGAAACAC GACCGTAAAG AATCAGCAAA 
650
GATCAAGAGA GAATTCGCAG AAGCTTCATG GAGCAACAAT GGAAGCACAG 
700
AAAATAATCA TAACAATAAT AGTTCAGACG CTAATCATGT GAGCATGATC 
750
AAAGATCTTT TCCCTTCTTC GATCCGATCC GCGACCGCGA CCACGACCTC 
800
TACCCATATT GATCATCAGA TTGTTCAAGA TCAAGATCAA GGGTTTTGCA 
850
ATATGTTCAA TGGTATTGAT GAAACGACGT CGGCTAGTTA TTGGGCATGG 
900
CCTGACCAGC AGCAACAACA TCACAATCAT CATCAGTTCA ATTGA
950

>AT5G15150.1 longest ORF length:314
MYMYEEERNN INNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS 
50
CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTTNN MNDQDQVGEE 
100
DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG 
150
LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL 
200
HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI 
250
KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW 
300
PDQQQQHHNH HQFN
350