fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G15840 FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2)

>AT5G15840.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
NcoI C|CATGG 776
NdeI CA|TATG 998
PstI CTGCA|G 600
StyI C|C[AT][AT]GG 443, 776
XhoI C|TCGAG 549


Click here to view TAIR data

>AT5G15840.1 length:1122
ATGTTGAAAC AAGAGAGTAA CGACATAGGT AGTGGAGAGA ACAACAGGGC 
50
ACGACCCTGT GACACATGCC GGTCAAACGC CTGCACCGTG TATTGCCATG 
100
CAGATTCTGC CTACTTGTGC ATGAGCTGTG ATGCTCAAGT TCACTCTGCC 
150
AATCGCGTTG CTTCCCGCCA TAAACGTGTC CGGGTCTGCG AGTCATGTGA 
200
GCGTGCTCCG GCTGCTTTTT TGTGTGAGGC AGATGATGCC TCTCTATGCA 
250
CAGCCTGTGA TTCAGAGGTT CATTCTGCAA ACCCACTTGC TAGACGCCAT 
300
CAGCGAGTTC CAATTCTACC AATTTCTGGA AACTCTTTCA GCTCCATGAC 
350
CACTACTCAC CACCAAAGCG AGAAAACAAT GACCGATCCA GAGAAGAGAC 
400
TGGTGGTGGA TCAAGAGGAA GGTGAAGAAG GTGATAAGGA TGCCAAGGAG 
450
GTTGCTTCGT GGCTGTTCCC TAATTCAGAC AAAAATAACA ATAACCAAAA 
500
CAATGGGTTA TTGTTTAGTG ATGAGTATCT AAACCTTGTG GATTACAACT 
550
CGAGTATGGA CTACAAATTC ACAGGTGAAT ACAGTCAACA CCAACAAAAC 
600
TGCAGCGTAC CACAGACGAG CTACGGGGGA GATAGAGTTG TTCCGCTTAA 
650
ACTTGAAGAA TCAAGGGGCC ACCAGTGCCA TAACCAACAG AATTTTCAGT 
700
TCAATATCAA ATATGGCTCC TCAGGGACTC ACTACAACGA CAATGGTTCC 
750
ATTAACCATA ACGCATACAT TTCATCCATG GAAACTGGTG TTGTGCCGGA 
800
GTCAACAGCA TGTGTCACAA CAGCTTCACA CCCAAGAACG CCCAAAGGGA 
850
CAGTAGAGCA ACAACCTGAC CCTGCAAGCC AGATGATAAC AGTAACACAA 
900
CTCAGTCCAA TGGACAGAGA AGCCAGGGTC CTGAGATACA GAGAGAAGAG 
950
GAAGACAAGG AAATTTGAGA AGACAATAAG GTATGCTTCG AGGAAGGCAT 
1000
ATGCAGAGAT AAGACCGCGG GTCAATGGCC GGTTCGCAAA GAGAGAAATC 
1050
GAAGCCGAGG AGCAAGGGTT CAACACGATG CTAATGTACA ACACAGGATA 
1100
TGGGATTGTT CCTTCATTCT GA
1150

>AT5G15840.1 longest ORF length:373
MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA 
50
NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH 
100
QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE 
150
VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN 
200
CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS 
250
INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ 
300
LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI 
350
EAEEQGFNTM LMYNTGYGIV PSF
400