|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G15840 | FG, CO | CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) |
>AT5G15840.2 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstNI, BstYI, BstZ17I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 152 |
| AciI | C|CGC | 163, 641 |
| AflIII | A|CPuPyGT | 174 |
| AluI | AG|CT | 122, 338, 617 |
| AlwNI | CAGNNN|CTG | 104 |
| ApoI | Pu|AATTPy | 565, 690 |
| AvaI | C|PyCGPuG | 549 |
| BfaI | C|TAG | 288 |
| BsaBI | GATNN|NNATC | 524 |
| BsaHI | GPu|CGPyC | 293 |
| BsaJI | C|CNNGG | 443 |
| BsiHKAI | G[AT]GC[AT]|C | 203 |
| BslI | CCNNNNN|NNGG | 324 |
| BsoBI | C|PyCGPuG | 549 |
| Bsp1286I | G[GAT]GC[CAT]|C | 47, 203 |
| BsrFI | Pu|CCGGPy | 68 |
| BsrI | ACTGGN| | 399 |
| BssKI | |CCNGG | 179 |
| BstAPI | GCANNNN|NTGC | 105, 234 |
| BstF5I | GGATGNN| | 439 |
| BstUI | CG|CG | 152 |
| BstXI | CCANNNNN|NTGG | 501 |
| Bsu36I | CC|TNAGG | 720 |
| Cac8I | GCN|NGC | 79, 201 |
| Cfr10I | [AG]|CCGG[TC] | 68 |
| DdeI | C|TNAG | 719 |
| DpnI | GA-CH3|TC | 383, 407 |
| DpnII | |GATC | 383, 407 |
| Fnu4HI | GC|NGC | 210, 601, 813 |
| HaeIII | GG|CC | 665 |
| HincII | GTPy|PuAC | 584 |
| HinfI | G|ANTC | 102, 189, 258, 657, 725 |
| HpaII | C|CGG | 67, 178, 206 |
| Hpy188I | TCN|GA | 261, 474 |
| HpyCH4III | ACN|GT | 84, 580 |
| HpyCH4IV | A|CGT | 172, 759 |
| HpyCH4V | TG|CA | 80, 97, 116, 245, 274, 599 |
| MboI | |GATC | 383, 407 |
| MseI | T|TAA | 645, 750 |
| MslI | CAPyNN|NNPuTG | 173 |
| MspI | C|CGG | 67, 178, 206 |
| MwoI | GCNNNNN|NNGC | 105, 210, 234, 673 |
| N.BstNBI | GAGTCNNNN|N | 194 |
| NciI | CC|[CG]GG | 179 |
| NlaIII | CATG| | 63, 95, 118, 192, 343 |
| NlaIV | GGN|NCC | 665, 715, 745 |
| NspI | PuCATG|Py | 64 |
| PaeR7I | C|TCGAG | 549 |
| PflMI | CCANNNN|NTGG | 324 |
| PstI | CTGCA|G | 600 |
| RsaI | GT|AC | 605 |
| Sau3AI | |GATC | 383, 407 |
| Sau96I | G|GNCC | 665 |
| ScrFI | CC|NGG | 179 |
| SfcI | C|TPuPyAG | 600 |
| SmlI | C|TPyPuAG | 134, 549 |
| StyI | C|C[AT][AT]GG | 443 |
| Taqƒ¿I | T|CGA | 548 |
| TfiI | G|A[AT]TC | 102, 258, 657 |
| TliI | C|TCGAG | 549 |
| TseI | G|C[AT]GC | 210, 601, 813 |
| Tsp45I | |GT[CG]AC | 58 |
| Tsp509I | |AATT | 310, 319, 470, 564, 689, 791 |
| TspRI | NNCA[CG]TGNN| | 674 |
| XhoI | C|TCGAG | 549 |
Click here to view TAIR data
>AT5G15840.2 length:825
ATGTTGAAAC AAGAGAGTAA CGACATAGGT AGTGGAGAGA ACAACAGGGC | 50 |
ACGACCCTGT GACACATGCC GGTCAAACGC CTGCACCGTG TATTGCCATG | 100 |
CAGATTCTGC CTACTTGTGC ATGAGCTGTG ATGCTCAAGT TCACTCTGCC | 150 |
AATCGCGTTG CTTCCCGCCA TAAACGTGTC CGGGTCTGCG AGTCATGTGA | 200 |
GCGTGCTCCG GCTGCTTTTT TGTGTGAGGC AGATGATGCC TCTCTATGCA | 250 |
CAGCCTGTGA TTCAGAGGTT CATTCTGCAA ACCCACTTGC TAGACGCCAT | 300 |
CAGCGAGTTC CAATTCTACC AATTTCTGGA AACTCTTTCA GCTCCATGAC | 350 |
CACTACTCAC CACCAAAGCG AGAAAACAAT GACCGATCCA GAGAAGAGAC | 400 |
TGGTGGTGGA TCAAGAGGAA GGTGAAGAAG GTGATAAGGA TGCCAAGGAG | 450 |
GTTGCTTCGT GGCTGTTCCC TAATTCAGAC AAAAATAACA ATAACCAAAA | 500 |
CAATGGGTTA TTGTTTAGTG ATGAGTATCT AAACCTTGTG GATTACAACT | 550 |
CGAGTATGGA CTACAAATTC ACAGGTGAAT ACAGTCAACA CCAACAAAAC | 600 |
TGCAGCGTAC CACAGACGAG CTACGGGGGA GATAGAGTTG TTCCGCTTAA | 650 |
ACTTGAAGAA TCAAGGGGCC ACCAGTGCCA TAACCAACAG AATTTTCAGT | 700 |
TCAATATCAA ATATGGCTCC TCAGGGACTC ACTACAACGA CAATGGTTCC | 750 |
ATTAACCATA ACGTAAGGCT TTTGTATATT TGTTACCCCT TCAATTTAGC | 800 |
ATCTTCCCAT AACGCAGCAG GGTGA | 850 |
>AT5G15840.2 longest ORF length:274
MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA | 50 |
NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH | 100 |
QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE | 150 |
VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN | 200 |
CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS | 250 |
INHNVRLLYI CYPFNLASSH NAAG | 300 |