fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G15840 FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2)

>AT5G15840.2 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
PstI CTGCA|G 600
StyI C|C[AT][AT]GG 443
XhoI C|TCGAG 549


Click here to view TAIR data

>AT5G15840.2 length:825
ATGTTGAAAC AAGAGAGTAA CGACATAGGT AGTGGAGAGA ACAACAGGGC 
50
ACGACCCTGT GACACATGCC GGTCAAACGC CTGCACCGTG TATTGCCATG 
100
CAGATTCTGC CTACTTGTGC ATGAGCTGTG ATGCTCAAGT TCACTCTGCC 
150
AATCGCGTTG CTTCCCGCCA TAAACGTGTC CGGGTCTGCG AGTCATGTGA 
200
GCGTGCTCCG GCTGCTTTTT TGTGTGAGGC AGATGATGCC TCTCTATGCA 
250
CAGCCTGTGA TTCAGAGGTT CATTCTGCAA ACCCACTTGC TAGACGCCAT 
300
CAGCGAGTTC CAATTCTACC AATTTCTGGA AACTCTTTCA GCTCCATGAC 
350
CACTACTCAC CACCAAAGCG AGAAAACAAT GACCGATCCA GAGAAGAGAC 
400
TGGTGGTGGA TCAAGAGGAA GGTGAAGAAG GTGATAAGGA TGCCAAGGAG 
450
GTTGCTTCGT GGCTGTTCCC TAATTCAGAC AAAAATAACA ATAACCAAAA 
500
CAATGGGTTA TTGTTTAGTG ATGAGTATCT AAACCTTGTG GATTACAACT 
550
CGAGTATGGA CTACAAATTC ACAGGTGAAT ACAGTCAACA CCAACAAAAC 
600
TGCAGCGTAC CACAGACGAG CTACGGGGGA GATAGAGTTG TTCCGCTTAA 
650
ACTTGAAGAA TCAAGGGGCC ACCAGTGCCA TAACCAACAG AATTTTCAGT 
700
TCAATATCAA ATATGGCTCC TCAGGGACTC ACTACAACGA CAATGGTTCC 
750
ATTAACCATA ACGTAAGGCT TTTGTATATT TGTTACCCCT TCAATTTAGC 
800
ATCTTCCCAT AACGCAGCAG GGTGA
850

>AT5G15840.2 longest ORF length:274
MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA 
50
NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH 
100
QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE 
150
VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN 
200
CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS 
250
INHNVRLLYI CYPFNLASSH NAAG
300