fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G16540 ZFN3 zinc finger nuclease 3 (.1.2.3)

>AT5G16540.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
SacI GAGCT|C 1006
StyI C|C[AT][AT]GG 337


Click here to view TAIR data

>AT5G16540.2 length:1107
ATGGATTTTG ATTCCATTTC TCGGGAAAGC ACTTTTCTTT CCCCATTGCT 
50
TAACCAAAAT GCAATGTGGC AAATGAACTT GGGATCAGAT GATACAATGG 
100
GTGTTGATGG GTCTTATCCG GAACGTCACG GAGAGCCAGA TTGTGCTTAT 
150
TATATAAGGA CTGGACTTTG TAGGTTTGGT TCAACTTGCC GATTCAATCA 
200
TCCTCACGAC CGGAAACTGG TTATAGCAAC TGCAAGGATT AAAGGAGAAT 
250
ACCCTGAAAG AATTGGTCAG CCTGAATGTG AGTTTTATCT GAAGACAGGG 
300
ACCTGCAAAT TCGGAGTGAC TTGCAAGTTT CATCATCCTA GGAACAAAGC 
350
TGGTATTGAT GGAAGTGTAT CAGTTAATGT CTTAAGCTAT CCTCTACGTC 
400
CGAACGAAGA TGATTGCTCT TACTTTTTGA GAATTGGACA ATGTAAATTT 
450
GGGGGAACTT GTAAATTCAA TCACCCTCAG ACTCAATCAA CCAACTTGAT 
500
GGTTTCTGTT CGTGGCTCTC CGGTTTACTC TGCTCTTCAA TCTCTAACTG 
550
GTCAACCGTC TTATTCTTGG TCGAGAACAT CTTTTGTTGC AAACCCTCCT 
600
CGTTTGCAAG ATCCTTCTGG TTTCGCTTCA GGATCTCAAG GAGGTCTCTT 
650
CTCATCCGGG TTTCATTCGG GAAATTCTGT TCCGCTCGGG TTCTATGCAT 
700
TACCTAGAGA GAATGTATTC CCGGAAAGAC CAGGCCAACC TGAATGCCAA 
750
TTCTACATGA AGACAGGAGA TTGCAAATTT GGAACAGTCT GCAAATTTCA 
800
TCATCCTAGA GACAGGCAAA CCCCTCCTCC TGATTGTGTC TTAAGCTCGG 
850
GAGAACCACT GTGCGTGTTC TATTCTCGGT ATGGGATCTG CAAGTTTGGT 
900
CCAAGCTGTA AATTTGATCA CCCGATGCGA GTCTTCACTT ACAACAACAA 
950
TACTGCATCT CCTTCTCCTT CATCATCTCT GCATCAAGAG ACTGCAATCA 
1000
CCACAGAGCT CAGGAATCTC CTAGTCTCTT CTTCTGTGGA AGCAAAACCC 
1050
ACATCACTCC CTGAAACAAC CTCTGCTAAA GACACCATTG TTGATGCACA 
1100
GCACTGA
1150

>AT5G16540.2 longest ORF length:368
MDFDSISRES TFLSPLLNQN AMWQMNLGSD DTMGVDGSYP ERHGEPDCAY 
50
YIRTGLCRFG STCRFNHPHD RKLVIATARI KGEYPERIGQ PECEFYLKTG 
100
TCKFGVTCKF HHPRNKAGID GSVSVNVLSY PLRPNEDDCS YFLRIGQCKF 
150
GGTCKFNHPQ TQSTNLMVSV RGSPVYSALQ SLTGQPSYSW SRTSFVANPP 
200
RLQDPSGFAS GSQGGLFSSG FHSGNSVPLG FYALPRENVF PERPGQPECQ 
250
FYMKTGDCKF GTVCKFHHPR DRQTPPPDCV LSSGEPLCVF YSRYGICKFG 
300
PSCKFDHPMR VFTYNNNTAS PSPSSSLHQE TAITTELRNL LVSSSVEAKP 
350
TSLPETTSAK DTIVDAQH
400