fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G16540 ZFN3 zinc finger nuclease 3 (.1.2.3)

>AT5G16540.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
SacI GAGCT|C 964
SmaI CCC|GGG 804
StyI C|C[AT][AT]GG 274


Click here to view TAIR data

>AT5G16540.3 length:1065
ATGTGGCAAA TGAACTTGGG ATCAGATGAT ACAATGGGTG TTGATGGGTC 
50
TTATCCGGAA CGTCACGGAG AGCCAGATTG TGCTTATTAT ATAAGGACTG 
100
GACTTTGTAG GTTTGGTTCA ACTTGCCGAT TCAATCATCC TCACGACCGG 
150
AAACTGGTTA TAGCAACTGC AAGGATTAAA GGAGAATACC CTGAAAGAAT 
200
TGGTCAGCCT GAATGTGAGT TTTATCTGAA GACAGGGACC TGCAAATTCG 
250
GAGTGACTTG CAAGTTTCAT CATCCTAGGA ACAAAGCTGG TATTGATGGA 
300
AGTGTATCAG TTAATGTCTT AAGCTATCCT CTACGTCCGA ACGAAGATGA 
350
TTGCTCTTAC TTTTTGAGAA TTGGACAATG TAAATTTGGG GGAACTTGTA 
400
AATTCAATCA CCCTCAGACT CAATCAACCA ACTTGATGGT TTCTGTTCGT 
450
GGCTCTCCGG TTTACTCTGC TCTTCAATCT CTAACTGGTC AACCGTCTTA 
500
TTCTTGGTCG AGAACATCTT TTGTTGCAAA CCCTCCTCGT TTGCAAGATC 
550
CTTCTGGTTT CGCTTCAGGA TCTCAAGGAG GTCTCTTCTC ATCCGGGTTT 
600
CATTCGGGAA ATTCTGTTCC GCTCGGGTTC TATGCATTAC CTAGAGAGAA 
650
TGTATTCCCG GAAAGACCAG GCCAACCTGA ATGCCAATTC TACATGAAGA 
700
CAGGAGATTG CAAATTTGGA ACAGTCTGCA AATTTCATCA TCCTAGAGAC 
750
AGGCAAACCC CTCCTCCTGA TTGTGTCTTA AGCTCGGTTG GCCTTCCTTT 
800
ACGCCCGGGA GAACCACTGT GCGTGTTCTA TTCTCGGTAT GGGATCTGCA 
850
AGTTTGGTCC AAGCTGTAAA TTTGATCACC CGATGCGAGT CTTCACTTAC 
900
AACAACAATA CTGCATCTCC TTCTCCTTCA TCATCTCTGC ATCAAGAGAC 
950
TGCAATCACC ACAGAGCTCA GGAATCTCCT AGTCTCTTCT TCTGTGGAAG 
1000
CAAAACCCAC ATCACTCCCT GAAACAACCT CTGCTAAAGA CACCATTGTT 
1050
GATGCACAGC ACTGA
1100

>AT5G16540.3 longest ORF length:354
MWQMNLGSDD TMGVDGSYPE RHGEPDCAYY IRTGLCRFGS TCRFNHPHDR 
50
KLVIATARIK GEYPERIGQP ECEFYLKTGT CKFGVTCKFH HPRNKAGIDG 
100
SVSVNVLSYP LRPNEDDCSY FLRIGQCKFG GTCKFNHPQT QSTNLMVSVR 
150
GSPVYSALQS LTGQPSYSWS RTSFVANPPR LQDPSGFASG SQGGLFSSGF 
200
HSGNSVPLGF YALPRENVFP ERPGQPECQF YMKTGDCKFG TVCKFHHPRD 
250
RQTPPPDCVL SSVGLPLRPG EPLCVFYSRY GICKFGPSCK FDHPMRVFTY 
300
NNNTASPSPS SSLHQETAIT TELRNLLVSS SVEAKPTSLP ETTSAKDTIV 
350
DAQH
400