fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G16600 ATMYB43 myb domain protein 43 (.1)

>AT5G16600.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 587
HindIII A|AGCTT 124, 398, 509
NcoI C|CATGG 46
PstI CTGCA|G 156
SacI GAGCT|C 113
SpeI A|CTAGT 652
StyI C|C[AT][AT]GG 46


Click here to view TAIR data

>AT5G16600.1 length:984
ATGGGGAGGC AACCATGTTG TGACAAAGTA GGGTTAAAGA AAGGGCCATG 
50
GACTATTGAA GAAGACAAGA AGCTCATCAA CTTCATCCTC ACCAATGGCC 
100
ATTGCTGTTG GAGAGCTCTT CCCAAGCTTT CTGGACTATT GCGGTGTGGT 
150
AAAAGCTGCA GATTAAGATG GATAAATTAT TTAAGACCTG ATTTAAAAAG 
200
AGGTCTTTTA TCAGAATATG AAGAACAAAA GGTCATTAAT CTCCATGCGC 
250
AACTTGGCAA TAGATGGTCA AAGATTGCCT CTCATCTACC AGGAAGAACT 
300
GATAATGAAA TAAAGAACCA TTGGAACACA CACATAAAGA AAAAGCTAAG 
350
GAAAATGGGT ATTGACCCTT TGACCCATAA GCCTCTCTCT GAACAAGAAG 
400
CTTCACAACA AGCTCAAGGG AGAAAGAAAA GTTTAGTGCC TCATGATGAC 
450
AAGAACCCAA AACAAGATCA ACAAACCAAA GACGAACAAG AACAACATCA 
500
ATTAGAGCAA GCTTTGGAGA AGAACAACAC ATCAGTGTCT GGTGATGGGT 
550
TTTGCATTGA TGAAGTCCCA TTGCTCAATC CACATGAGAT CTTGATCGAC 
600
ATCTCTTCTT CTCATCATCA TCATTCTAAT GATGATAATG TCAATATCAA 
650
CACTAGTAAA TTTACTTCTC CTTCTTCCTC TTCCTCTTCT ACGTCGTCGT 
700
GTATATCATC AGTAGTACCG GGTGATGAGT TCTCCAAGTT TTTTGATGAA 
750
ATGGAGATTC TTGACCTCAA GTGGCTTTCA TCCGATGATT CTTTAGGGGA 
800
CGATATTAGC AAAGACGGCA AGTTCAACAA CAGTACTGTT GATACGATGA 
850
ACTTGTGGGA CATCAATGAT TTGAGCAGCT TGGATATGTT TATGAATGAA 
900
CATGATGATG GTTTTATTGG AAATGGAAAT GGATGTTCAA GAATGGTTTT 
950
AGATCAAGAT TCATGGACAT TTGATCTCCT CTAG
1000

>AT5G16600.1 longest ORF length:327
MGRQPCCDKV GLKKGPWTIE EDKKLINFIL TNGHCCWRAL PKLSGLLRCG 
50
KSCRLRWINY LRPDLKRGLL SEYEEQKVIN LHAQLGNRWS KIASHLPGRT 
100
DNEIKNHWNT HIKKKLRKMG IDPLTHKPLS EQEASQQAQG RKKSLVPHDD 
150
KNPKQDQQTK DEQEQHQLEQ ALEKNNTSVS GDGFCIDEVP LLNPHEILID 
200
ISSSHHHHSN DDNVNINTSK FTSPSSSSSS TSSCISSVVP GDEFSKFFDE 
250
MEILDLKWLS SDDSLGDDIS KDGKFNNSTV DTMNLWDIND LSSLDMFMNE 
300
HDDGFIGNGN GCSRMVLDQD SWTFDLL
350