fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G17300 RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1)

>AT5G17300.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, NcoI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
HindIII A|AGCTT 540
KpnI GGTAC|C 34
PstI CTGCA|G 71
PvuII CAG|CTG 572
SacI GAGCT|C 336, 663, 1057
StyI C|C[AT][AT]GG 128
XhoI C|TCGAG 311


Click here to view TAIR data

>AT5G17300.1 length:1164
ATGGCGTCGT CTCCGTTGAC TGCAAATGTT CAGGGTACCA ACGCTTCTTT 
50
GAGGAATAGA GATGAAGAAA CTGCAGACAA GCAGATACAA TTCAATGACC 
100
AAAGTTTTGG GGGAAATGAC TATGCACCCA AGGTACGGAA GCCATACACG 
150
ATAACAAAAG AGAGAGAGAG ATGGACAGAT GAAGAGCACA AGAAGTTTGT 
200
TGAAGCCTTG AAATTATACG GGCGAGCTTG GAGACGAATA GAAGAACATG 
250
TGGGCTCAAA GACCGCAGTT CAGATTCGAA GCCATGCTCA GAAGTTTTTC 
300
TCTAAGGTTG CTCGAGAAGC AACTGGAGGT GATGGGAGCT CAGTAGAGCC 
350
GATTGTAATA CCTCCTCCTC GTCCCAAGAG AAAGCCAGCG CATCCGTACC 
400
CTCGTAAGTT TGGGAACGAG GCAGATCAAA CAAGTAGATC GGTTTCTCCC 
450
TCAGAACGTG ATACTCAATC TCCAACCTCT GTGTTGTCCA CTGTTGGATC 
500
AGAAGCATTG TGTTCCCTTG ATTCGAGTTC ACCCAATCGA AGCTTGTCCC 
550
CAGTTTCTTC TGCATCACCA CCAGCTGCTC TTACAACCAC TGCAAATGCA 
600
CCTGAAGAGC TTGAGACTCT GAAGCTGGAG TTGTTTCCTA GTGAGAGACT 
650
CTTAAACAGG GAGAGCTCGA TCAAGGAACC AACGAAGCAA AGTCTTAAAC 
700
TCTTTGGGAA GACAGTTTTG GTATCTGATT CAGGCATGTC CTCTTCTCTA 
750
ACAACTTCAA CATATTGTAA ATCCCCAATT CAGCCATTAC CACGGAAACT 
800
CTCATCATCC AAGACACTAC CCATAATAAG AAACTCACAA GAAGAACTCT 
850
TGAGCTGCTG GATACAAGTC CCTCTTAAGC AAGAAGATGT GGAAAATAGA 
900
TGTTTGGATT CAGGAAAGGC TGTCCAAAAC GAAGGATCAT CGACTGGATC 
950
AAACACTGGT TCGGTGGATG ATACGGGACA CACGGAAAAG ACCACAGAAC 
1000
CCGAAACAAT GCTATGTCAA TGGGAGTTTA AACCAAGTGA GAGGTCTGCA 
1050
TTTTCTGAGC TCAGAAGAAC AAACTCCGAG TCAAATTCAA GAGGATTTGG 
1100
TCCATACAAG AAGAGAAAGA TGGTAACAGA AGAAGAAGAG CATGAGATTC 
1150
ATCTCCACTT ATAA
1200

>AT5G17300.1 longest ORF length:387
MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT 
50
ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF 
100
SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP 
150
SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA 
200
PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL 
250
TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR 
300
CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA 
350
FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
400