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| Locus | Common name | Short description |
| AT5G17320 | HDG9 | homeodomain GLABROUS 9 (.1) |
>AT5G17320.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AgeI, AhdI, AlwI, ApaI, AscI, AvrII, BaeI, BalI, BamHI, BbsI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BsrBI, BsrFI, BsrGI, BssHII, BstBI, BstXI, BstZ17I, BtsI, Cfr10I, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, PI-PspI, PI-SceI(VDE), PacI, PciI, PleI, PmeI, PmlI, PpuMI, PsiI, PspOMI, PstI, PvuI, PvuII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, XbaI, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 167 |
| AccI | GT|[AC][TG]AC | 49 |
| AccII(FnuDII) | CG|CG | 11, 654 |
| AciI | C|CGC | 639, 644, 653, 662, 1604, 1893 |
| AfeI | AGC|GCT | 273 |
| AflII | C|TTAAG | 1678 |
| AflIII | A|CPuPyGT | 1372 |
| AluI | AG|CT | 238, 976, 1299, 1339, 1818, 1838, 2006, 2111 |
| AlwNI | CAGNNN|CTG | 1733 |
| Aor51HI(Eco47III) | AGC|GCT | 273 |
| ApaLI | G|TGCAC | 410 |
| ApoI | Pu|AATTPy | 110, 157, 211, 678, 1084 |
| AseI | AT|TAAT | 1810 |
| AvaI | C|PyCGPuG | 586, 1789 |
| AvaII | G|G[AT]CC | 366, 516, 609, 1351, 2049 |
| BanI | G|GPyPuCC | 1071 |
| BanII | GPuGCPy|C | 823, 1340 |
| BbvCI | CC|TCAGC | 650 |
| BsaBI | GATNN|NNATC | 922, 1922 |
| BsaHI | GPu|CGPyC | 52, 167 |
| BsaJI | C|CNNGG | 370, 513, 820, 1078, 1233, 1719, 1768, 1985, 1997, 2024 |
| BsaWI | [AT]|CCGG[AT] | 1756, 1951, 2047 |
| BsiEI | CGPuPy|CG | 1974 |
| BsiHKAI | G[AT]GC[AT]|C | 410, 1213, 1340 |
| BslI | CCNNNNN|NNGG | 354, 1986, 2024, 2125 |
| BsoBI | C|PyCGPuG | 586, 1789 |
| Bsp1286I | G[GAT]GC[CAT]|C | 410, 823, 1213, 1340 |
| BspDI | AT|CGAT | 1921 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 1071 |
| BsrDI | GCAATGNN| | 714 |
| BsrI | ACTGGN| | 699 |
| BssKI | |CCNGG | 369, 819, 1428, 1608, 2075 |
| BssSI | C|TCGTG | 620 |
| BstAPI | GCANNNN|NTGC | 267 |
| BstEII | G|GTNACC | 86 |
| BstF5I | GGATGNN| | 769, 904, 1131, 1506 |
| BstNI | CC|[AT]GG | 369, 819, 2075 |
| BstUI | CG|CG | 11, 654 |
| BstYI | Pu|GATCPy | 1884, 2036 |
| Bsu36I | CC|TNAGG | 1096, 1206 |
| BtgI | C|CPuPyGG | 513, 1233, 1719, 2024 |
| BtrI | CAC|GTC | 991 |
| Cac8I | GCN|NGC | 1897 |
| ClaI | AT|CGAT | 1921 |
| DdeI | C|TNAG | 241, 276, 649, 844, 868, 1095, 1205, 1243, 1735, 1816 |
| DpnI | GA-CH3|TC | 815, 916, 1090, 1172, 1758, 1883, 1922, 1960, 2035, 2128 |
| DpnII | |GATC | 815, 916, 1090, 1172, 1758, 1883, 1922, 1960, 2035, 2128 |
| EaeI | Py|GGCCPu | 1291, 1974 |
| EagI | C|GGCCG | 1974 |
| EcoRV | GAT|ATC | 1918 |
| Fnu4HI | GC|NGC | 270, 653, 662, 723, 1289, 1324, 1740, 1902, 2005 |
| HaeII | PuGCGC|Py | 273 |
| HaeIII | GG|CC | 496, 1290, 1867, 1973 |
| HhaI | GCG|C | 272, 1899 |
| HinP1I | G|CGC | 272, 1899 |
| HincII | GTPy|PuAC | 1006, 1519, 1601 |
| HindIII | A|AGCTT | 1300 |
| HinfI | G|ANTC | 188, 245, 312, 445, 870, 986, 999, 1682, 1724 |
| HpaI | GTT|AAC | 1519 |
| HpaII | C|CGG | 1428, 1608, 1755, 1950, 2046 |
| Hpy188I | TCN|GA | 191, 741, 1545, 1983, 2051 |
| Hpy99I | CG[AT]CG| | 165, 491, 1344 |
| HpyCH4III | ACN|GT | 67, 464, 547, 577, 1058, 1353, 1541, 1776, 2022, 2094, 2118 |
| HpyCH4IV | A|CGT | 125, 166, 301, 489, 536, 990, 1198, 1250, 1345, 1370, 1707 |
| HpyCH4V | TG|CA | 268, 325, 409, 483, 529, 672, 709, 1050, 1190, 1437, 1467, 1498, 1849 |
| MboI | |GATC | 815, 916, 1090, 1172, 1758, 1883, 1922, 1960, 2035, 2128 |
| MfeI | C|AATTG | 965 |
| MseI | T|TAA | 291, 929, 1518, 1677, 1809 |
| MslI | CAPyNN|NNPuTG | 101, 763 |
| MspA1I | C[AC]G|C[GT]G | 664, 725, 1560 |
| MspI | C|CGG | 1428, 1608, 1755, 1950, 2046 |
| MwoI | GCNNNNN|NNGC | 267, 279, 417, 653, 671, 732, 1298, 1330, 1459, 1737, 1902 |
| N.BstNBI | GAGTCNNNN|N | 250, 450, 875 |
| NciI | CC|[CG]GG | 1428, 1608 |
| NcoI | C|CATGG | 513, 1719 |
| NlaIII | CATG| | 351, 512, 527, 628, 1262, 1500, 1718, 2137 |
| NlaIV | GGN|NCC | 565, 1071 |
| NruI | TCG|CGA | 12 |
| NsiI | ATGCA|T | 484, 530, 1468, 1850 |
| NspI | PuCATG|Py | 1263 |
| PaeR7I | C|TCGAG | 1789 |
| PflFI | GACN|NNGTC | 1123 |
| PflMI | CCANNNN|NTGG | 357 |
| PshAI | GACNN|NNGTC | 1976 |
| PspGI | |CC[AT]GG | 369, 819, 2075 |
| RsaI | GT|AC | 466, 559, 1666 |
| RsrII | CG|G[AT]CCG | 2050 |
| SacI | GAGCT|C | 1340 |
| Sau3AI | |GATC | 815, 916, 1090, 1172, 1758, 1883, 1922, 1960, 2035, 2128 |
| Sau96I | G|GNCC | 366, 516, 609, 1351, 2049 |
| ScrFI | CC|NGG | 369, 819, 1428, 1608, 2075 |
| SmlI | C|TPyPuAG | 24, 236, 1029, 1363, 1678, 1789, 2143 |
| SspI | AAT|ATT | 289, 836 |
| StyI | C|C[AT][AT]GG | 513, 1719, 1768 |
| Taqƒ¿I | T|CGA | 388, 492, 918, 1012, 1342, 1527, 1788, 1920 |
| TfiI | G|A[AT]TC | 188, 312, 986, 999, 1682, 1724 |
| TliI | C|TCGAG | 1789 |
| TseI | G|C[AT]GC | 270, 723, 1740, 1902, 2005 |
| Tsp45I | |GT[CG]AC | 70, 247, 475, 1061, 1248, 1696, 1752, 1969 |
| Tsp509I | |AATT | 109, 156, 210, 677, 706, 964, 1083, 1111, 1564, 1798 |
| TspRI | NNCA[CG]TGNN| | 330, 1703, 1777 |
| Tth111I | GACN|NNGTC | 1123 |
| XhoI | C|TCGAG | 1789 |
| XmnI | GAANN|NNTTC | 110, 570 |
Click here to view TAIR data
>AT5G17320.1 length:2157
ATGGATTTTA CTCGCGATGA CAACTCAAGT GATGAACGGG AAAATGATGT | 50 |
AGACGCCAAC ACCAACAACC GTCACGAGAA GAAGGGTTAC CATCGCCACA | 100 |
CTAATGAACA AATTCATAGG CTTGAAACGT ATTTCAAGGA ATGTCCTCAT | 150 |
CCAGACGAAT TTCAGCGACG TCTGTTGGGT GAAGAACTGA ATCTGAAACC | 200 |
AAAACAAATC AAATTTTGGT TTCAAAACAA AAGAACTCAA GCTAAGAGTC | 250 |
ACAATGAAAA AGCAGACAAT GCAGCGCTTA GGGCAGAAAA TATTAAGATT | 300 |
AGACGTGAGA ACGAATCAAT GGAAGATGCA CTGAATAATG TGGTTTGCCC | 350 |
TCCATGTGGT GGTCGTGGTC CTGGGAGAGA AGACCAACTT CGACATCTCC | 400 |
AAAAACTCCG TGCACAAAAC GCTTATCTCA AAGATGAGTA TGAAAGAGTC | 450 |
TCAAACTACC TAAAACAGTA CGGAGGTCAC TCAATGCATA ACGTCGAGGC | 500 |
CACACCCTAT CTCCATGGTC CATCAAACCA TGCATCAACG TCCAAGAACC | 550 |
GTCCAGCATT GTACGGAACC TCTTCTAACC GTCTCCCCGA GCCTTCAAGC | 600 |
ATATTTAGAG GACCATACAC TCGTGGAAAC ATGAACACCA CCGCACCGCC | 650 |
TCAGCCGCGA AAGCCGCTGG AAATGCAGAA TTTCCAACCA CTATCTCAAC | 700 |
TGGAGAAAAT TGCAATGTTG GAAGCAGCGG AAAAAGCGGT GTCAGAGGTT | 750 |
TTGAGCCTCA TTCAAATGGA TGATACAATG TGGAAAAAGT CGTCTATTGA | 800 |
TGATAGGCTC GTCATTGATC CAGGGCTCTA TGAGAAATAT TTTACTAAGA | 850 |
CTAACACAAA TGGTCGTCCT GAGTCTTCTA AAGATGTCGT GGTGGTTCAA | 900 |
ATGGATGCTG GAAACTTGAT CGACATCTTC TTAACTGCGG AGAAATGGGC | 950 |
GAGGCTTTTT CCAACAATTG TGAACGAAGC TAAAACGATT CACGTCTTGG | 1000 |
ATTCCGTTGA CCATCGAGGA AAAACTTTCT CAAGAGTGAT TTATGAGCAA | 1050 |
CTGCACATAC TGTCACCATT GGTGCCACCG AGGGAATTTA TGATCCTAAG | 1100 |
GACTTGCCAA CAAATTGAAG ACAATGTCTG GATGATTGCT GATGTGTCGT | 1150 |
GTCATCTCCC AAACATTGAG TTTGATCTTT CGTTTCCCAT TTGCACCAAA | 1200 |
CGTCCCTCAG GTGTGCTCAT TCAAGCCTTG CCCCACGGCT TCTCTAAGGT | 1250 |
GACGTGGATA GAGCATGTGG TAGTGAATGA TAATAGAGTG CGGCCACATA | 1300 |
AGCTTTACAG AGACCTCTTA TACGGCGGCT TTGGCTACGG AGCTCGACGT | 1350 |
TGGACCGTTA CTCTTGAGAG GACGTGTGAG AGGCTGATTT TCTCCACCTC | 1400 |
CGTCCCTGCC TTGCCCAACA ATGACAATCC CGGAGTTGTG CAAACAATAC | 1450 |
GAGGCAGAAA TAGCGTAATG CATTTGGGAG AAAGAATGTT GAGGAACTTT | 1500 |
GCATGGATGA TGAAAATGGT TAACAAACTC GACTTCTCGC CACAGTCTGA | 1550 |
AACTAACAAC AGCGGAATTA GGATTGGGGT GCGGATAAAC AATGAGGCGG | 1600 |
GTCAACCGCC CGGTCTCATT GTCTGTGCTG GTTCATCTTT ATCCCTCCCT | 1650 |
CTCCCTCCTG TCCAAGTGTA CGATTTCCTT AAGAATCTGG AGGTTCGTCA | 1700 |
CCAGTGGGAC GTTCTGTGCC ATGGGAATCC AGCGACTGAG GCTGCTCGTT | 1750 |
TCGTCACCGG ATCAAACCCA AGGAACACTG TGTCTTTTCT CGAGCCTTCA | 1800 |
ATTAGGGATA TTAATACTAA GCTAATGATA CTCCAAGATA GCTTCAAAGA | 1850 |
TGCATTGGGA GGAATGGTGG CCTACGCTCC AATGGATCTA AACACCGCCT | 1900 |
GCGCTGCCAT TTCAGGCGAT ATCGATCCTA CCACCATTCC AATCCTCCCT | 1950 |
TCCGGTTTTA TGATCTCCCG TGACGGCCGT CCTTCCGAGG GCGAAGCCGA | 2000 |
GGGTGGCAGC TATACACTCC TCACCGTGGC TTTCCAGATC CTTGTCTCCG | 2050 |
GTCCGAGTTA CTCTCCTGAT ACCAACCTGG AAGTTTCTGC CACCACAGTC | 2100 |
AATACCTTGA TTAGCTCCAC CGTTCAAAGG ATCAAAGCCA TGCTCAAGTG | 2150 |
CGAATGA | 2200 |
>AT5G17320.1 longest ORF length:718
MDFTRDDNSS DERENDVDAN TNNRHEKKGY HRHTNEQIHR LETYFKECPH | 50 |
PDEFQRRLLG EELNLKPKQI KFWFQNKRTQ AKSHNEKADN AALRAENIKI | 100 |
RRENESMEDA LNNVVCPPCG GRGPGREDQL RHLQKLRAQN AYLKDEYERV | 150 |
SNYLKQYGGH SMHNVEATPY LHGPSNHAST SKNRPALYGT SSNRLPEPSS | 200 |
IFRGPYTRGN MNTTAPPQPR KPLEMQNFQP LSQLEKIAML EAAEKAVSEV | 250 |
LSLIQMDDTM WKKSSIDDRL VIDPGLYEKY FTKTNTNGRP ESSKDVVVVQ | 300 |
MDAGNLIDIF LTAEKWARLF PTIVNEAKTI HVLDSVDHRG KTFSRVIYEQ | 350 |
LHILSPLVPP REFMILRTCQ QIEDNVWMIA DVSCHLPNIE FDLSFPICTK | 400 |
RPSGVLIQAL PHGFSKVTWI EHVVVNDNRV RPHKLYRDLL YGGFGYGARR | 450 |
WTVTLERTCE RLIFSTSVPA LPNNDNPGVV QTIRGRNSVM HLGERMLRNF | 500 |
AWMMKMVNKL DFSPQSETNN SGIRIGVRIN NEAGQPPGLI VCAGSSLSLP | 550 |
LPPVQVYDFL KNLEVRHQWD VLCHGNPATE AARFVTGSNP RNTVSFLEPS | 600 |
IRDINTKLMI LQDSFKDALG GMVAYAPMDL NTACAAISGD IDPTTIPILP | 650 |
SGFMISRDGR PSEGEAEGGS YTLLTVAFQI LVSGPSYSPD TNLEVSATTV | 700 |
NTLISSTVQR IKAMLKCE | 750 |