fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G17430 BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)

>AT5G17430.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, StyI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 501
HindIII A|AGCTT 197, 292
SpeI A|CTAGT 511
XhoI C|TCGAG 1138


Click here to view TAIR data

>AT5G17430.1 length:1755
ATGAACTCGA TGAATAACTG GTTAGGCTTC TCTCTCTCTC CTCATGATCA 
50
AAATCATCAC CGTACGGATG TTGACTCCTC CACCACCAGA ACCGCCGTAG 
100
ATGTTGCCGG AGGGTACTGT TTTGATCTGG CCGCTCCCTC CGATGAATCT 
150
TCTGCCGTTC AAACATCTTT TCTTTCTCCT TTCGGTGTCA CCCTCGAAGC 
200
TTTCACCAGA GACAATAATA GTCACTCCCG AGATTGGGAC ATCAATGGTG 
250
GTGCATGCAA TAACATTAAC AATAACGAAC AAAATGGACC AAAGCTTGAG 
300
AATTTCCTCG GCCGCACCAC CACGATTTAC AATACCAACG AGACCGTTGT 
350
AGATGGAAAT GGCGATTGTG GAGGAGGAGA CGGTGGTGGT GGCGGCTCAC 
400
TAGGCCTTTC GATGATAAAA ACATGGCTGA GTAATCATTC GGTTGCTAAT 
450
GCTAATCATC AAGACAATGG TAACGGTGCA CGAGGCTTGT CCCTCTCTAT 
500
GAATTCATCT ACTAGTGATA GCAACAACTA CAACAACAAT GATGATGTCG 
550
TCCAAGAGAA GACTATTGTT GATGTCGTAG AAACTACACC GAAGAAAACT 
600
ATTGAGAGTT TTGGACAAAG GACGTCTATA TACCGCGGTG TTACAAGGCA 
650
TCGGTGGACA GGTAGATACG AGGCACATTT ATGGGACAAT AGTTGCAAAA 
700
GAGAAGGCCA GACTCGCAAA GGAAGACAAG TTTATCTGGG AGGTTATGAC 
750
AAAGAAGAAA AAGCAGCTAG GGCTTACGAT TTAGCCGCAC TAAAGTATTG 
800
GGGAACCACC ACTACTACTA ACTTCCCCTT GAGTGAATAT GAGAAAGAGG 
850
TAGAAGAGAT GAAGCACATG ACGAGGCAAG AGTATGTTGC CTCTCTGCGC 
900
AGGAAAAGTA GTGGTTTCTC TCGTGGTGCA TCGATTTATC GAGGAGTAAC 
950
AAGGCATCAC CAACATGGAA GGTGGCAAGC TAGGATCGGA AGAGTCGCCG 
1000
GTAACAAAGA CCTCTACTTG GGAACTTTCG GCACACAGGA AGAGGCTGCT 
1050
GAGGCTTATG ACATTGCAGC CATTAAATTC AGAGGATTAA GCGCAGTGAC 
1100
TAACTTCGAC ATGAACAGAT ACAATGTTAA AGCAATCCTC GAGAGCCCGA 
1150
GTCTACCTAT TGGTAGTTCT GCGAAACGTC TCAAGGACGT TAATAATCCG 
1200
GTTCCAGCTA TGATGATTAG TAATAACGTT TCAGAGAGTG CAAATAATGT 
1250
TAGCGGTTGG CAAAACACTG CGTTTCAGCA TCATCAGGGA ATGGATTTGA 
1300
GCTTATTGCA GCAACAGCAG GAGAGGTACG TTGGTTATTA CAATGGAGGA 
1350
AACTTGTCTA CCGAGAGTAC TAGGGTTTGT TTCAAACAAG AGGAGGAACA 
1400
ACAACACTTC TTGAGAAACT CGCCGAGTCA CATGACTAAT GTTGATCATC 
1450
ATAGCTCGAC CTCTGATGAT TCTGTTACCG TTTGTGGAAA TGTTGTTAGT 
1500
TATGGTGGTT ATCAAGGATT CGCAATCCCT GTTGGAACAT CGGTTAATTA 
1550
CGATCCCTTT ACTGCTGCTG AGATTGCTTA CAACGCAAGA AATCATTATT 
1600
ACTATGCTCA GCATCAGCAA CAACAGCAGA TTCAGCAGTC GCCGGGAGGA 
1650
GATTTTCCGG TGGCGATTTC GAATAACCAT AGCTCTAACA TGTACTTTCA 
1700
CGGGGAAGGT GGTGGAGAAG GGGCTCCAAC GTTTTCAGTT TGGAACGACA 
1750
CTTAG
1800

>AT5G17430.1 longest ORF length:584
MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES 
50
SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE 
100
NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN 
150
ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT 
200
IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD 
250
KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR 
300
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA 
350
EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP 
400
VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG 
450
NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS 
500
YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG 
550
DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT
600