fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G17810 WOX12 WUSCHEL related homeobox 12 (.1.2)

>AT5G17810.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DdeI, DraIII, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 789
AciI C|CGC 264, 270
AluI AG|CT 246, 286, 385, 545
ApoI Pu|AATTPy 169
BalI TGG|CCA 507
BanI G|GPyPuCC 789
BclI T|GATCA 519, 579
BglII A|GATCT 226
BsaBI GATNN|NNATC 524
BsaJI C|CNNGG 438
BsaWI [AT]|CCGG[AT] 75
Bsp1286I G[GAT]GC[CAT]|C 56
BspT107I(HgiCI) G|G[TC][AG]CC 789
BsrFI Pu|CCGGPy 242
BsrI ACTGGN| 203
BssKI |CCNGG 53, 785
BstEII G|GTNACC 66
BstNI CC|[AT]GG 785
BstYI Pu|GATCPy 226
Cac8I GCN|NGC 320
Cfr10I [AG]|CCGG[TC] 242
DpnI GA-CH3|TC 225, 405, 518, 578
DpnII |GATC 225, 405, 518, 578
DraI TTT|AAA 567
DrdI GACNNNN|NNGTC 193
EaeI Py|GGCCPu 311, 507
Fnu4HI GC|NGC 245, 255, 267, 337, 533, 555
HaeIII GG|CC 310, 440, 506
HincII GTPy|PuAC 121
HinfI G|ANTC 2, 96, 488, 513, 693
HpaI GTT|AAC 121
HpaII C|CGG 52, 74, 232, 241
Hpy188I TCN|GA 516, 576
Hpy99I CG[AT]CG| 216, 409
HpyCH4III ACN|GT 109, 117, 141, 218, 621
HpyCH4IV A|CGT 58, 192
HpyCH4V TG|CA 321, 335, 556, 753
KpnI GGTAC|C 789
MboI |GATC 225, 405, 518, 578
MscI TGG|CCA 507
MseI T|TAA 120, 399, 566
MslI CAPyNN|NNPuTG 319
MspI C|CGG 52, 74, 232, 241
MwoI GCNNNNN|NNGC 264
NciI CC|[CG]GG 53
NlaIII CATG| 304, 313, 319, 509, 670, 767, 801
NlaIV GGN|NCC 789
NsiI ATGCA|T 322, 754
NspI PuCATG|Py 320
PsiI TTA|TAA 629
PspGI |CC[AT]GG 785
RsaI GT|AC 114, 788
Sau3AI |GATC 225, 405, 518, 578
ScrFI CC|NGG 53, 785
SmlI C|TPyPuAG 163
SphI GCATG|C 320
Taqƒ¿I T|CGA 93
TfiI G|A[AT]TC 2, 96, 488, 513, 693
TseI G|C[AT]GC 245, 255, 267, 337, 533, 555
Tsp45I |GT[CG]AC 65
Tsp509I |AATT 168, 389
TspRI NNCA[CG]TGNN| 112, 733
XmnI GAANN|NNTTC 493


Click here to view TAIR data

>AT5G17810.1 length:807
ATGAATCAAG AAGGTGCTTC ACATAGCCCA TCCTCCACTT CCACCGAACC 
50
AGTCCGGGCA CGTTGGTCAC CTAAACCGGA GCAAATCTTG ATACTCGAAT 
100
CCATCTTCAA CAGTGGTACT GTTAACCCAC CAAAAGATGA AACGGTGAGG 
150
ATAAGAAAGA TGCTTGAGAA ATTCGGTGCT GTGGGAGACG CAAACGTCTT 
200
CTACTGGTTT CAAAACCGAC GGTCAAGATC TCGCCGGAGA CACCGGCAGC 
250
TTTTAGCAGC CACCACCGCA GCCGCCACCT CCATAGGAGC TGAAGACCAC 
300
CAGCACATGA CGGCCATGAG CATGCATCAA TATCCTTGCA GCAACAACGA 
350
GATTGATTTG GGGTTTGGAA GTTGTAGCAA CTTATCAGCT AATTACTTCC 
400
TTAATGGATC GTCGTCATCT CAAATCCCTT CCTTTTTCCT CGGCCTCTCT 
450
TCTTCAAGTG GTGGGTGTGA GAACAACAAT GGTATGGAGA ATCTCTTCAA 
500
AATGTATGGC CATGAATCTG ATCATAATCA TCAGCAGCAG CATCATAGCT 
550
CAAATGCTGC ATCAGTTTTA AACCCATCTG ATCAAAACTC CAACTCCCAA 
600
TACGAACAAG AAGGGTTTAT GACGGTGTTT ATAAACGGAG TTCCTATGGA 
650
AGTAACAAAA GGAGCAATAG ACATGAAAAC AATGTTCGGT GATGATTCGG 
700
TGTTACTTCA TTCCTCTGGT CTTCCTCTTC CCACTGATGA GTTTGGTTTC 
750
TTGATGCATT CTTTACAACA TGGACAAACT TATTTCCTGG TACCGAGACA 
800
GACATGA
850

>AT5G17810.1 longest ORF length:268
MNQEGASHSP SSTSTEPVRA RWSPKPEQIL ILESIFNSGT VNPPKDETVR 
50
IRKMLEKFGA VGDANVFYWF QNRRSRSRRR HRQLLAATTA AATSIGAEDH 
100
QHMTAMSMHQ YPCSNNEIDL GFGSCSNLSA NYFLNGSSSS QIPSFFLGLS 
150
SSSGGCENNN GMENLFKMYG HESDHNHQQQ HHSSNAASVL NPSDQNSNSQ 
200
YEQEGFMTVF INGVPMEVTK GAIDMKTMFG DDSVLLHSSG LPLPTDEFGF 
250
LMHSLQHGQT YFLVPRQT
300