|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G18000 | VDD | VERDANDI (.1) |
>AT5G18000.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRV, HpaI, KpnI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 689 |
| EcoRI | G|AATTC | 646 |
| HindIII | A|AGCTT | 14 |
| NcoI | C|CATGG | 175 |
| NdeI | CA|TATG | 715, 782 |
| PvuII | CAG|CTG | 491 |
| StyI | C|C[AT][AT]GG | 175, 836 |
Click here to view TAIR data
>AT5G18000.1 length:924
ATGGTGAAAA ACAAAGCTTT TTTTGGTCAG ATTATGGAAG AAAGAGATAA | 50 |
TCCAGCATTC TTCAAGATTC TTCGAAGGGA AGATCATTCG ACTGAAATGA | 100 |
TGAGAATGAT TCCTCATCAC TTGATAAGAA GCATCTCCGA CAAGTCTTCA | 150 |
TCGTTTAAGA TGGTCTTAAG AGTACCATGG GGAAGGTCAT GGCAAGTTAA | 200 |
AATCTCCAAG AACCCAAATT TTCACTACAT GGAAGATCGT GGATGGAACC | 250 |
AGTTTGTGAA TGACAACGGT TTGGGTGAAA ACGAGTATCT TACTTTCACT | 300 |
CATGAGGCAA ATATGTGCTT TAATGTAACC ATATTCGAGG CAGATGGTAC | 350 |
GGAGATGCTT AGACCAAGAA AAACCATTAC TTCTAGTTCC GGTCGGAACA | 400 |
AGAGAGAAGA GAGGAAGAGC ATCTACAAAG ATGTGAAGAA GGAAGAAGAG | 450 |
ATAGAGTCTT GGTCTGAATC GAGCCATCCT TGTCACAAAA CAGCTGAATC | 500 |
TACAAGTGGG AGATTGACGC AGAAACAGGA GCTTAACTTG AGAAAGAAGG | 550 |
AAGCCGATAA AACCGAAAAA TCCAAGACGA GTAAGAAGAA GAAGGTGGAA | 600 |
ACTGTTAGTA ACGACTCTGA AGCCGGTACT TCATCTCTTA TTCCAGAATT | 650 |
CAAGCTCACC ATAAAGAAAT CACACCTTCT GTTCTTGGGG ATCCCAAAGA | 700 |
AATTTGTGGA TATGCATATG CCAACTGAGA CAACGATGTT CAAGATTCAT | 750 |
TATCCGAGAG GAAAGAAGTC ATGGGATGTT ACATATGTGG TCACTGATGT | 800 |
ACAATCAAGA TTCTCTGGTG GATGGAGTCG TTTGGCCAAG GAGTTAGGTT | 850 |
TACTGGTCGG AGATGTTTGT ACGTTCAAGC TCATCAAACC GACAGAGATG | 900 |
CGTGTGAAAG TCTCCAAAGA ATAG | 950 |
>AT5G18000.1 longest ORF length:307
MVKNKAFFGQ IMEERDNPAF FKILRREDHS TEMMRMIPHH LIRSISDKSS | 50 |
SFKMVLRVPW GRSWQVKISK NPNFHYMEDR GWNQFVNDNG LGENEYLTFT | 100 |
HEANMCFNVT IFEADGTEML RPRKTITSSS GRNKREERKS IYKDVKKEEE | 150 |
IESWSESSHP CHKTAESTSG RLTQKQELNL RKKEADKTEK SKTSKKKKVE | 200 |
TVSNDSEAGT SSLIPEFKLT IKKSHLLFLG IPKKFVDMHM PTETTMFKIH | 250 |
YPRGKKSWDV TYVVTDVQSR FSGGWSRLAK ELGLLVGDVC TFKLIKPTEM | 300 |
RVKVSKE | 350 |