fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G18240 MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5)

>AT5G18240.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, KpnI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 156, 1113
HindIII A|AGCTT 1084
HpaI GTT|AAC 937
NcoI C|CATGG 353
PstI CTGCA|G 676
PvuII CAG|CTG 581, 1179
SacI GAGCT|C 496, 871
StyI C|C[AT][AT]GG 21, 353, 573
XbaI T|CTAGA 1110


Click here to view TAIR data

>AT5G18240.2 length:1191
ATGTATTACC ACAACCAGCA CCAAGGAAAG AGCATCCTCT CTTCATCGAG 
50
AATGCCCATT TCTTCTGAAA GGCATCCGTT CCTCAGAGGA AATGGCACAG 
100
GAGATTCTGG ACTCATTCTC TCCACTGATG CAAAGCCACG ACTAAAATGG 
150
ACTCCAGATC TTCACGAGAG ATTTGTTGAA GCGGTCAACC AGCTTGGAGG 
200
AGGAGATAAG GCTACTCCTA AGACAATCAT GAAAGTCATG GGCATTCCAG 
250
GCCTTACCTT ATACCATCTC AAGAGTCATC TTCAGAAATA TAGGCTAAGC 
300
AAGAATCTTA ATGGACAAGC TAACAGCAGT TTAAACAAGA CAAGTGTGAT 
350
GACCATGGTA GAAGAAAACC CCCCTGAAGT AGACGAAAGT CACAGTGAGA 
400
GTTTAAGCAT TGGACCACAG CCGAGCATGA ACTTACCCAT AAGTGATGCC 
450
CTTCAAATGC AAATAGAGGT CCAGAGACGG CTACACGAGC AACTTGAGCT 
500
CAGGATAGAG GCTCAAGGAA AGTACCTGCA ATCGATTCTG GAGAAAGCAC 
550
AAGAGACTCT TGGAAGACAG AACCTAGGTG CAGCTGGGAT TGAAGCAACA 
600
AAAGCTCAAC TCTCAGAATT AGTATCTAAA GTATCAGCAG ACTATCCAGA 
650
CTCTAGTTTC CTCGAACCGA AAGAACTGCA GAATCTACAC CATCAACAGA 
700
TGCAAAAAAC GTATCCACCT AACTCCTCCC TGGACAGTTG CCTAACCTCA 
750
AGTGAAGGAA CTCAGAAAGC CCCAAAGATG CTTGACAACA GACTGGGATT 
800
AAGAACATAT ATTGGAGATT CAACTTCAGA GCAGAAAGAG ATAATGGAAG 
850
AGCCATTCTT CCATAGAATG GAGCTCACAT GGGCAGAAGA AGAAAGCCTC 
900
AGAGAGAATC ACAACAGGCC ATATCTTTCA ACAATGGTTA ACAACGCAGA 
950
ACCGAGAATC TCGTCTTCAA GAAGAAGTCC TGGAAGATTG TCAATAGGAG 
1000
TGGGATTACA TGAACACAGA GGAAGGAGTA GCAACAACAG TGAGTATACA 
1050
GAAGAAAGAT TCAACGAGAA TAATGAAGAT TGCAAGCTTG AAACACACAC 
1100
AAGAACAGCT CTAGATCTTA ACACACACGA CGAAAACTAT GGCACAACGC 
1150
GTCCTAAACA GTTTGATTTA AATGGTTTCA GCTGGAATTG A
1200

>AT5G18240.2 longest ORF length:396
MYYHNQHQGK SILSSSRMPI SSERHPFLRG NGTGDSGLIL STDAKPRLKW 
50
TPDLHERFVE AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS 
100
KNLNGQANSS LNKTSVMTMV EENPPEVDES HSESLSIGPQ PSMNLPISDA 
150
LQMQIEVQRR LHEQLELRIE AQGKYLQSIL EKAQETLGRQ NLGAAGIEAT 
200
KAQLSELVSK VSADYPDSSF LEPKELQNLH HQQMQKTYPP NSSLDSCLTS 
250
SEGTQKAPKM LDNRLGLRTY IGDSTSEQKE IMEEPFFHRM ELTWAEEESL 
300
RENHNRPYLS TMVNNAEPRI SSSRRSPGRL SIGVGLHEHR GRSSNNSEYT 
350
EERFNENNED CKLETHTRTA LDLNTHDENY GTTRPKQFDL NGFSWN
400