fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G18240 MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5)

>AT5G18240.5 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, KpnI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 156, 1125
HindIII A|AGCTT 1096
HpaI GTT|AAC 949
NcoI C|CATGG 353
PstI CTGCA|G 688
PvuII CAG|CTG 593, 1191
SacI GAGCT|C 883
StyI C|C[AT][AT]GG 21, 353, 585
XbaI T|CTAGA 1122


Click here to view TAIR data

>AT5G18240.5 length:1203
ATGTATTACC ACAACCAGCA CCAAGGAAAG AGCATCCTCT CTTCATCGAG 
50
AATGCCCATT TCTTCTGAAA GGCATCCGTT CCTCAGAGGA AATGGCACAG 
100
GAGATTCTGG ACTCATTCTC TCCACTGATG CAAAGCCACG ACTAAAATGG 
150
ACTCCAGATC TTCACGAGAG ATTTGTTGAA GCGGTCAACC AGCTTGGAGG 
200
AGGAGATAAG GCTACTCCTA AGACAATCAT GAAAGTCATG GGCATTCCAG 
250
GCCTTACCTT ATACCATCTC AAGAGTCATC TTCAGAAATA TAGGCTAAGC 
300
AAGAATCTTA ATGGACAAGC TAACAGCAGT TTAAACAAGA CAAGTGTGAT 
350
GACCATGGTA GAAGAAAACC CCCCTGAAGT AGACGAAAGT CACAGTGAGA 
400
GTTTAAGCAT TGGACCACAG CCGAGCATGA ACTTACCCAT AAGTGATGCC 
450
CTTCAAATGC AAATAGAGGT CCAGAGACGG CTACACGAGC AACTTGAGCG 
500
ACATTTGCAG CTCAGGATAG AGGCTCAAGG AAAGTACCTG CAATCGATTC 
550
TGGAGAAAGC ACAAGAGACT CTTGGAAGAC AGAACCTAGG TGCAGCTGGG 
600
ATTGAAGCAA CAAAAGCTCA ACTCTCAGAA TTAGTATCTA AAGTATCAGC 
650
AGACTATCCA GACTCTAGTT TCCTCGAACC GAAAGAACTG CAGAATCTAC 
700
ACCATCAACA GATGCAAAAA ACGTATCCAC CTAACTCCTC CCTGGACAGT 
750
TGCCTAACCT CAAGTGAAGG AACTCAGAAA GCCCCAAAGA TGCTTGACAA 
800
CAGACTGGGA TTAAGAACAT ATATTGGAGA TTCAACTTCA GAGCAGAAAG 
850
AGATAATGGA AGAGCCATTC TTCCATAGAA TGGAGCTCAC ATGGGCAGAA 
900
GAAGAAAGCC TCAGAGAGAA TCACAACAGG CCATATCTTT CAACAATGGT 
950
TAACAACGCA GAACCGAGAA TCTCGTCTTC AAGAAGAAGT CCTGGAAGAT 
1000
TGTCAATAGG AGTGGGATTA CATGAACACA GAGGAAGGAG TAGCAACAAC 
1050
AGTGAGTATA CAGAAGAAAG ATTCAACGAG AATAATGAAG ATTGCAAGCT 
1100
TGAAACACAC ACAAGAACAG CTCTAGATCT TAACACACAC GACGAAAACT 
1150
ATGGCACAAC GCGTCCTAAA CAGTTTGATT TAAATGGTTT CAGCTGGAAT 
1200
TGA
1250

>AT5G18240.5 longest ORF length:400
MYYHNQHQGK SILSSSRMPI SSERHPFLRG NGTGDSGLIL STDAKPRLKW 
50
TPDLHERFVE AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS 
100
KNLNGQANSS LNKTSVMTMV EENPPEVDES HSESLSIGPQ PSMNLPISDA 
150
LQMQIEVQRR LHEQLERHLQ LRIEAQGKYL QSILEKAQET LGRQNLGAAG 
200
IEATKAQLSE LVSKVSADYP DSSFLEPKEL QNLHHQQMQK TYPPNSSLDS 
250
CLTSSEGTQK APKMLDNRLG LRTYIGDSTS EQKEIMEEPF FHRMELTWAE 
300
EESLRENHNR PYLSTMVNNA EPRISSSRRS PGRLSIGVGL HEHRGRSSNN 
350
SEYTEERFNE NNEDCKLETH TRTALDLNTH DENYGTTRPK QFDLNGFSWN 
400