|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G18560 | PUCHI | Integrase-type DNA-binding superfamily protein (.1) |
>AT5G18560.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp509I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 179 |
| AccI | GT|[AC][TG]AC | 331 |
| AccII(FnuDII) | CG|CG | 523 |
| AccIII(BspMII) | T|CCGGA | 173, 741 |
| AciI | C|CGC | 87, 522, 927, 965 |
| AluI | AG|CT | 256, 265, 286, 313, 772, 833 |
| AvaI | C|PyCGPuG | 693 |
| AvrII | C|CTAGG | 165 |
| BclI | T|GATCA | 905 |
| BfaI | C|TAG | 17, 164, 239, 626, 774 |
| BsaBI | GATNN|NNATC | 455 |
| BsaHI | GPu|CGPyC | 179 |
| BsaJI | C|CNNGG | 154, 165, 184, 524 |
| BsaWI | [AT]|CCGG[AT] | 173, 741, 789 |
| BslI | CCNNNNN|NNGG | 819 |
| BsoBI | C|PyCGPuG | 693 |
| BspDI | AT|CGAT | 448 |
| BspEI | T|CCGGA | 173, 741 |
| BspHI | T|CATGA | 873 |
| BsrFI | Pu|CCGGPy | 115 |
| BsrI | ACTGGN| | 236 |
| BssKI | |CCNGG | 153 |
| BstBI | TT|CGAA | 841 |
| BstF5I | GGATGNN| | 957 |
| BstNI | CC|[AT]GG | 153 |
| BstUI | CG|CG | 523 |
| BstYI | Pu|GATCPy | 213 |
| BtgI | C|CPuPyGG | 184, 524 |
| Cac8I | GCN|NGC | 144, 796 |
| Cfr10I | [AG]|CCGG[TC] | 115 |
| ClaI | AT|CGAT | 448 |
| DdeI | C|TNAG | 1034 |
| DpnI | GA-CH3|TC | 70, 135, 212, 449, 890, 904 |
| DpnII | |GATC | 70, 135, 212, 449, 890, 904 |
| Fnu4HI | GC|NGC | 198, 267, 288, 525, 921, 927, 965, 993 |
| HaeIII | GG|CC | 128, 745 |
| HincII | GTPy|PuAC | 3 |
| HinfI | G|ANTC | 169, 866 |
| HpaII | C|CGG | 114, 130, 172, 740, 768, 788 |
| Hpy188I | TCN|GA | 68, 807 |
| HpyCH4III | ACN|GT | 437, 513 |
| HpyCH4IV | A|CGT | 178, 229 |
| HpyCH4V | TG|CA | 707, 1012 |
| MboI | |GATC | 70, 135, 212, 449, 890, 904 |
| MseI | T|TAA | 656, 729 |
| MspA1I | C[AC]G|C[GT]G | 524 |
| MspI | C|CGG | 114, 130, 172, 740, 768, 788 |
| MwoI | GCNNNNN|NNGC | 149, 264, 801, 927 |
| N.BstNBI | GAGTCNNNN|N | 174 |
| NcoI | C|CATGG | 184 |
| NdeI | CA|TATG | 815 |
| NlaIII | CATG| | 183, 872, 901 |
| NlaIV | GGN|NCC | 150, 161, 963 |
| PspGI | |CC[AT]GG | 153 |
| RsaI | GT|AC | 306 |
| SacII | CCGC|GG | 524 |
| Sau3AI | |GATC | 70, 135, 212, 449, 890, 904 |
| ScrFI | CC|NGG | 153 |
| SfcI | C|TPuPyAG | 1022 |
| SmlI | C|TPyPuAG | 311 |
| StyI | C|C[AT][AT]GG | 165, 184 |
| Taqƒ¿I | T|CGA | 249, 316, 447, 840 |
| TfiI | G|A[AT]TC | 866 |
| TseI | G|C[AT]GC | 198, 267, 288, 921, 993 |
| Tsp45I | |GT[CG]AC | 232 |
| TspRI | NNCA[CG]TGNN| | 236, 725 |
Click here to view TAIR data
>AT5G18560.1 length:1047
ATGTCAACCT CCAAAACCCT AGACCATAAT AAACCATTTG AAACATCCCA | 50 |
AACGCAAATG GGTTTTGCTC TGATCCACCA AAACACATCC GCCAACACAA | 100 |
CCACCACCAC CACAACCGGC GAGAGACGAG GCCGGAGATC AAAGCAAGCG | 150 |
GAGCCAGGGA GGTTCCTAGG AGTCCGGAGA CGTCCATGGG GTCGTTACGC | 200 |
AGCCGAGATA AGAGATCCAA CCACCAAAGA ACGTCACTGG CTAGGCACTT | 250 |
TCGACACAGC TCACGAAGCT GCTCTTGCCT ACGATAGAGC TGCTCTTTCA | 300 |
ATGAGAGGTA CTCAAGCTCG AACCAACTTC GTCTACACTC CAACTGATGT | 350 |
CCACACCATC CTCACAAACC CTAATCTCCA CTCTCTCATT GTCTCTCCTT | 400 |
ACAATAACAA CCAATCTTTC TTACCAAACT CTTCTCCACA GTTTGTCATC | 450 |
GATCATCATC CTCATTATCA AAACTATCAT CAACCACAAC AACCTAAACA | 500 |
CACTCTCCCC CAAACTGTCT TACCCGCGGC TTCTTTCAAA ACGCCAGTTC | 550 |
GTCATCAAAG CGTGGATATT CAAGCGTTTG GTAATAGTCC TCAAAACTCA | 600 |
TCTTCTAACG GCTCGTTATC TTCTTCACTA GACGAAGAAA ACAACTTCTT | 650 |
CTTCTCTTTA ACAAGCGAAG AACATAATAA GTCCAATAAC AACTCGGGTT | 700 |
ACTTGGATTG CATTGTCCCA AACCACTGCC TTAAACCACC TCCGGAGGCC | 750 |
ACCACCACCC AAAATCAAGC CGGAGCTAGT TTCACAACTC CGGTAGCAAG | 800 |
CAAAGCCTCT GAACCATATG GAGGGTTTAG TAATAGCTAC TTCGAAGATG | 850 |
GTGAGATGAT GATGATGAAT CATCATGAGT TTGGTTCGTG TGATCTCTCT | 900 |
GCCATGATCA CGAACTATGG TGCTGCTGCC GCTTCAATGT CAATGGAAGA | 950 |
TTACGGGATG ATGGAGCCGC AAGATTTATC TTCTTCTTCT ATCGCTGCTT | 1000 |
TTGGAGATGT CGTTGCAGAC ACTACAGGCT TCTACTCAGT CTTTTAG | 1050 |
>AT5G18560.1 longest ORF length:348
MSTSKTLDHN KPFETSQTQM GFALIHQNTS ANTTTTTTTG ERRGRRSKQA | 50 |
EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAHEA ALAYDRAALS | 100 |
MRGTQARTNF VYTPTDVHTI LTNPNLHSLI VSPYNNNQSF LPNSSPQFVI | 150 |
DHHPHYQNYH QPQQPKHTLP QTVLPAASFK TPVRHQSVDI QAFGNSPQNS | 200 |
SSNGSLSSSL DEENNFFFSL TSEEHNKSNN NSGYLDCIVP NHCLKPPPEA | 250 |
TTTQNQAGAS FTTPVASKAS EPYGGFSNSY FEDGEMMMMN HHEFGSCDLS | 300 |
AMITNYGAAA ASMSMEDYGM MEPQDLSSSS IAAFGDVVAD TTGFYSVF | 350 |